Gene SeD_A3982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3982 
Symbol 
ID6874997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3820473 
End bp3821375 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content53% 
IMG OID642786939 
ProductLysR substrate binding domain-containing protein 
Protein accessionYP_002217567 
Protein GI198246047 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value0.324102 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGATA AAATATATGC AATGAAATTG TTTGTACGCG TGGCGGAACG GGAAAGTTTT 
TCCCGCGCAG CAGAGGATAT CGGCCTTCCC AAAGGCAGCG TCTCACGGCA AATACAAGCG 
TTAGAACATC AACTGGGCAT CCGCCTGCTC CACCGCACCA CCCGGCGGGT ACAACTTACT 
CAGGACGGAA TGGTTTACTA CGAACGGGCA AAAGATCTGT TGAGTAACCT GGATGAACTG 
GAGGGTCTTT TCCAGCCTGA TCCCGCCAGT ATCAGTGGCA AAATACGGGT AGATATACCG 
CCATGTCTCG CAAACAGCCT CATCATGCCG CGCCTGCCCA CTTTTTTGCA TCAGTATCCC 
GGCATTGCGC TGGAACTTTG TAGTAGCGAT CGACAGGTCG ATTTACTACG GGAAGATTTC 
GACTGCGTGG TGCGCACAGA GCCGCTACAT GCGCCAGGGA TACTGACGCG CCCGCTTGGC 
AAACTGAGAA GAGTGAACTG CGCCAGCCCA CAATACCTGG CGCGCTTTGG GTATCCAGAA 
AACCTTGACG ATCTCGCCTC ACATGCGGTG GTGCATTATT CATTGACCCC GGGAGTTTCT 
TCACCGGGTT TTGCCTTTGA AACTCCCCAC GGTATGCAGT GGGTAAAAAC CGGCGGAATG 
CTAACGGTAA ACAGTACGGA GACTTGGCAT ACAGCCTGTC TGGCAGGATT AGGAATCATT 
CAGACGCCGC GCATTGCTGT ACGGGAGGCG TTACGCGCCG GAACGCTCAT TGAAATTTTA 
CCGCAATATC GCGCCGCTCC ACTGCCGATG ACGCTGCATT ATCCCCATCG CCGTAATCTT 
TCCCGCCGGG TACACCTGTT TATGGTATGG CTGACGGAAA GCATTAAAGA GGCCGCAGAG 
TAG
 
Protein sequence
MMDKIYAMKL FVRVAERESF SRAAEDIGLP KGSVSRQIQA LEHQLGIRLL HRTTRRVQLT 
QDGMVYYERA KDLLSNLDEL EGLFQPDPAS ISGKIRVDIP PCLANSLIMP RLPTFLHQYP 
GIALELCSSD RQVDLLREDF DCVVRTEPLH APGILTRPLG KLRRVNCASP QYLARFGYPE 
NLDDLASHAV VHYSLTPGVS SPGFAFETPH GMQWVKTGGM LTVNSTETWH TACLAGLGII 
QTPRIAVREA LRAGTLIEIL PQYRAAPLPM TLHYPHRRNL SRRVHLFMVW LTESIKEAAE