Gene SeD_A3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3980 
Symbol 
ID6873962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3818881 
End bp3819237 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content48% 
IMG OID642786937 
Productputative phage endolysin 
Protein accessionYP_002217565 
Protein GI198245053 
COG category[R] General function prediction only 
COG ID[COG3772] Phage-related lysozyme (muraminidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.526858 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCACA TTTCATCTCG CTTTAGCTCC GCCTGCATCG CGTTTATTAA ACAGTGGCAG 
GGTCTGTCGC TGGAAAAGTA TCGCGATCGG CAGGGTAACT GGGTGATTGG TTACGGGCAT 
ATGTTGACGC CGGATGAGAC GCTGACGTTC ATTACGCCCG ACCAGGCGGA GGCATTCTTG 
CTGGATGACC TCAATAGCTG CGATATACTG CTACAGAATT GTTTGCCGGA ACTTAACGAT 
CGGTTTCAAC GCGAAACGCT TATTGCGCTG ATGTTCAGCA TCGGACATCA GCGTTTTTTA 
TCATTAATCA ATACGGGTGA TATTTCACAG CCAGAAATAA GCGGACTGCG AATTTAA
 
Protein sequence
MPHISSRFSS ACIAFIKQWQ GLSLEKYRDR QGNWVIGYGH MLTPDETLTF ITPDQAEAFL 
LDDLNSCDIL LQNCLPELND RFQRETLIAL MFSIGHQRFL SLINTGDISQ PEISGLRI