Gene SeD_A3978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3978 
SymboltreF 
ID6874657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3815349 
End bp3816998 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content55% 
IMG OID642786935 
Producttrehalase 
Protein accessionYP_002217563 
Protein GI198243471 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1626] Neutral trehalase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.744709 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAACC AGAAATTAAA CCCCACGCCT TCTGAAGATC TGACTATTGA TGTCGATCTG 
CTTTATGAAA CAGACCCGTG CGAGTTAAAG CTGGATGAAA TGATCGAGGC GGAACCGGAG
CCGGAGATGA TCGAGGGGCT TCCCGCCTCT GACGCCCTGA CCCCTGCCGA TCGGTATCTC
GAACTGTTCG AGCATGTACA GTCAACAAAA CTGTTTCCAG ACAGTAAAAC GTTCCCGGAC
TGCGCGCCGA AGATGGACCC GCTTGATATC CTGATCCGCT ACCGTAAGGT CAGACGCCAC
CGTGATTTTG ATTTACGCCG CTTCGTCGAG AACCATTTCT GGCTACCGGA AACCTTATCC
AGCGAGTATG TCTCTAACCC CGAAAACTCG CTCAAAGAAC ATATTGACCA GCTTTGGCCG
ATACTGACGC GCGAACCGCA GGATCATATT CCGTGGTCTT CGCTGCTGGC GCTGCCGCAA
TCCTATATCG TGCCGGGAGG CCGCTTTAGC GAAACCTATT ATTGGGACTC TTATTTTACC
ATGCTGGGTC TGGCGGAAAG CGGGCGCGAA GACTTACTTA AATGTATGGC GGATAATTTC
GCCTGGATGA TTGAAAACTA TGGCCATATT CCCAACGGCA ACCGGACCTA TTATCTGAGC
CGCTCGCAGC CGCCGGTTTT CGCCCTGATG GTTGAACTGT TCGAAGAAGA TGGCGTACGC
GGCGCGCGGC GTTATCTCGA CCATCTCAAA ATGGAATACG CCTTCTGGAT GGACGGCGCC
GAATCGCTGG CGCTCAACCA GGCTTATCGC CACGTTGTGC GGATGCCGGA CGGCTCCCTG
CTGAACCGCT ACTGGGACGA TCGCGACACG CCGCGCGACG AGTCCTGGCT GGAAGATGTC
GAAACCGCAA AACACTCCGG TCGTCCGCCC AATGAAGTCT ACCGGGATTT GCGCGCCGGG
GCGGCGTCCG GCTGGGACTA TTCTTCACGC TGGCTACGCG ATGCGGGCCG GCTTGCCAGC
ATACGTACGA CCCAGTTTAT CCCTATCGAT TTGAACGCTT TTCTGTATAA ACTGGAGAGC
GCTATCGCCA ATATTTCAGC GCTGAAAGGC GAACGTGACA CCGAGGCGCT ATTTCGCCAG
AAAGCCAGCG ATCGACGCGC CGCCGTGAAC CATTATTTGT GGGATGATGA AAACGGCTGT
TATCGGGACT ATGACTGGCG ACGCGAAGAA ATGGCGCTCT TTTCCGCCGC CAGTATCGTG
CCGCTGTATG TCGGTATGGC GAACCATGAG CAGGCCGACC GCCTGGCAAA TGTGGTACGT
AGCCGTCTGT TAACGCCCGG CGGGATTATG GCGACCGAAT ACGAAACCGG CGAACAGTGG
GATAAACCGA ACGGCTGGGC ACCGCTGCAA TGGATGGCGA TCCAGGGCTT CAAACGGTAT
GGCGACGATA TGCTGGGCGA TGAAATCGCC CATAACTGGT TAAAAACAGT GAACCATTTT
TATCAGGAGC ACCACAAACT GATCGAGAAA TACCATATTT CCGGCGGTAC GCCCCGCGAA
GGCGGCGGGG GCGAGTATCC GCTACAGGAT GGGTTCGGCT GGACCAATGG CGTGGTGCGC
CGCCTGATTG GCCTTTACGG AGAGCCTTAA
 
Protein sequence
MLNQKLNPTP SEDLTIDVDL LYETDPCELK LDEMIEAEPE PEMIEGLPAS DALTPADRYL 
ELFEHVQSTK LFPDSKTFPD CAPKMDPLDI LIRYRKVRRH RDFDLRRFVE NHFWLPETLS
SEYVSNPENS LKEHIDQLWP ILTREPQDHI PWSSLLALPQ SYIVPGGRFS ETYYWDSYFT
MLGLAESGRE DLLKCMADNF AWMIENYGHI PNGNRTYYLS RSQPPVFALM VELFEEDGVR
GARRYLDHLK MEYAFWMDGA ESLALNQAYR HVVRMPDGSL LNRYWDDRDT PRDESWLEDV
ETAKHSGRPP NEVYRDLRAG AASGWDYSSR WLRDAGRLAS IRTTQFIPID LNAFLYKLES
AIANISALKG ERDTEALFRQ KASDRRAAVN HYLWDDENGC YRDYDWRREE MALFSAASIV
PLYVGMANHE QADRLANVVR SRLLTPGGIM ATEYETGEQW DKPNGWAPLQ WMAIQGFKRY
GDDMLGDEIA HNWLKTVNHF YQEHHKLIEK YHISGGTPRE GGGGEYPLQD GFGWTNGVVR
RLIGLYGEP