Gene SeD_A3977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3977 
Symbol 
ID6875098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3814304 
End bp3815023 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content49% 
IMG OID642786934 
ProductGntR family regulatory protein 
Protein accessionYP_002217562 
Protein GI198245220 
COG category[K] Transcription 
COG ID[COG2188] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones71 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAGC AACCCGACAG TAAAAGCGCC AAACCGCTTT ATAAGCAGCT TGAAGCCGCC 
TTAAAAGAGG CCATTGCGCG TGGAGAGTAT AAACCAGGCC AGCAGATCCC GACGGAAAAT 
GAACTGAGCG CGCGCTGGCA GGTGAGCAGG GTCACGGTCC GTAAGGCGTT GGATGCGCTG 
ACGCGTGAAA ATTTGCTGAC CCGTGTCTCC GGCAAAGGCA CCTTTGTCTC TGGTGAGAAA 
TTTCAGCGTA GCATGACCGG CATCATGAGT TTCAGCGAGT TATGCCAGTC CCAGGGACGT 
CGCCCGGGGT CACGCACCAT CAAATCCGTT TTTGAATCGG TAGACGATGA GACAAAAGCG 
TTACTGAATA TGAACGATGG CGAAAAAGCG GTCGTCATTG AACGTATCCG CTATGCCGAC 
GATGTGGCGG TATCGCTGGA AACCGTACAT CTTCCCCCAC GTTTTGCGTT TTTGCTGGAC 
GAAGATCTTA ATAATCACTC TTTGTATGAA TGCTTACGCG AGAAATACCA TTTATGGTTT 
ACCCACTCCC GTAAGATGAT CGAACTGGTT TATGCCAGCT TTGAAGTCGC CCATTATCTT 
GGCGTCAACG AGGGTTATCC GCTGATCCTG ATAAAAAGTG AAATGATTGA TAACAAAGGA 
GAACTCTCCT GCGTTTCGCA ACAGTTGATT GTCGGCGATA AAATACGGTT TACCGTATGA
 
Protein sequence
MIEQPDSKSA KPLYKQLEAA LKEAIARGEY KPGQQIPTEN ELSARWQVSR VTVRKALDAL 
TRENLLTRVS GKGTFVSGEK FQRSMTGIMS FSELCQSQGR RPGSRTIKSV FESVDDETKA 
LLNMNDGEKA VVIERIRYAD DVAVSLETVH LPPRFAFLLD EDLNNHSLYE CLREKYHLWF 
THSRKMIELV YASFEVAHYL GVNEGYPLIL IKSEMIDNKG ELSCVSQQLI VGDKIRFTV