Gene SeD_A3954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3954 
Symbol 
ID6872493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3789350 
End bp3790399 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content52% 
IMG OID642786913 
Productinner membrane protein YhhT 
Protein accessionYP_002217541 
Protein GI198243580 
COG category[R] General function prediction only 
COG ID[COG0628] Predicted permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.835894 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones93 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACCG CTCAACCCGA CAAAACGGGT ATGCATATTC TGCTGAAACT GGCCTCCCTG 
GTTATTATTC TCGCCGGGAT TCATGCCGCG GCGGGTATTA TTGTACAACT CTTGCTGGCG 
CTCTTTTTCG CCATCGTTCT TAACCCATTA GTGACCTGGT TTATTCGTCG GGGCGTGAAG 
CGACCGCTGG CGATTACTAT CGTGGTGGTT GTCATGCTGA TCGTGCTTAC CGCGCTGGTG 
GGTGTGCTTG CCGCATCGTT TAATGAATTT ATCGCTATGC TGCCTAAATA CAGCAAGGAG 
CTGACGCGTA AGGTCTTACA CCTTCAGGAG TTAATGCCCT TCCTGAATTT ACATATGTCG 
CCGGAACGTA TGCTCCGCGG GATGGATTCC GATAAAATCA TGCTCTTCAC CACAACATTA 
ATGACCGGCG TATCGGGCGC GATGGCAAGC ATTGTGCTGC TGGTAATGAC CGTGGTTTTT 
ATGCTGTTTG AGGTGCGTCA CGTGCCTTAT AAATTACGTT TCGCGCTAAA CAATCCACAA 
ATTCATATTG CCGGCCTGCA CCGCGCCCTG AAAGGCGTCT CGCATTATCT GGCGCTGAAA 
ACGCTGCTCA GTCTATGGAC GGGCGCGATT ATCTGGCTGG GGCTGGCGTT AATGGATATT 
CAGTTTGCGC TAATGTGGGG CGTACTGGCC TTTTTGCTCA ATTACGTTCC TAATATCGGC 
TCGGTGATTT CCGCCGTTCC CCCCATGATT CAGGCGCTGT TATTTAACGG TTTTTACGAG 
TGCGTACTGG TCGGCGCGCT CTTTTTGCTG GTCCATATGG TGATTGGCAA CATTATGGAG 
CCACGCATGA TGGGCCATCG TCTGGGAATG TCCACGCTGG TGGTATTTCT TTCGTTATTG 
GTCTGGGGAT GGCTATTAGG CCCGGTCGGG ATGCTCTTGT CCGTTCCTTT GACCAGCGTC 
TGCAAAATCT GGATGGAAAC CACTAAAGGC GGCAGCAAAC TGGCGATCTT ACTGGGGCCA 
GGCCGACCGA AAAGCCGTTT ACCGGGATGA
 
Protein sequence
MATAQPDKTG MHILLKLASL VIILAGIHAA AGIIVQLLLA LFFAIVLNPL VTWFIRRGVK 
RPLAITIVVV VMLIVLTALV GVLAASFNEF IAMLPKYSKE LTRKVLHLQE LMPFLNLHMS 
PERMLRGMDS DKIMLFTTTL MTGVSGAMAS IVLLVMTVVF MLFEVRHVPY KLRFALNNPQ 
IHIAGLHRAL KGVSHYLALK TLLSLWTGAI IWLGLALMDI QFALMWGVLA FLLNYVPNIG 
SVISAVPPMI QALLFNGFYE CVLVGALFLL VHMVIGNIME PRMMGHRLGM STLVVFLSLL 
VWGWLLGPVG MLLSVPLTSV CKIWMETTKG GSKLAILLGP GRPKSRLPG