Gene SeD_A3946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3946 
Symbol 
ID6872246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3781515 
End bp3782141 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content58% 
IMG OID642786905 
Producthypothetical protein 
Protein accessionYP_002217533 
Protein GI198244711 
COG category[S] Function unknown 
COG ID[COG3714] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.665772 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones90 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTGGT CGTTTATCGC TGTCTGCCTG TCCGCATGGC TGTATGTGGA CGCCTCCTAT 
CGCGGGCCAG CCTGGCAACG CTGGGTTTTT AAGCCCGTCA CGTTATTACT ATTGCTGTTA 
CTGGCCTGGC AAGCGCCGAT GTTTGACGCC ATCAGTTATC TTGTGTTGGC CGGACTGTGC 
GCCTCGCTGG TCGGCGATGC GTTAACGCTC TTACCGCGTC AACGCCTGTT GTACGCCGTC 
GGGGCATTTT TCTTATCGCA TCTGCTCTAC ACCATTTACT TTGCCAGCCA AATGACGTTG 
TCGTTCTTCT GGCCGCTGCC GCTGGCGTTA CTGATAGTCG GCGCGTTGCT TATCGCCGTT 
ATCTGGACGC GACTGGAGGA GCTACGCTGG CCGGTATGTA CTTTTATCGC CATGACGCTG 
GTCATGGTCT GGCTGGCGGG CGAACTGTGG TTCTTCCGCC CAACGGCGCC AGCCCTTTCG 
GCCTTTACCG GCGCGACGCT GCTGTTTATC GGCAATATCG TCTGGCTGGG TAGCCATTAC 
CGCCGCCGTT TCCGGGCGGA TAACGCGATT GCCGCCGCCT GCTACTTTGC CGGACACTTC 
CTGATTGTTC GCTCGCTGTA CCTGTAA
 
Protein sequence
MLWSFIAVCL SAWLYVDASY RGPAWQRWVF KPVTLLLLLL LAWQAPMFDA ISYLVLAGLC 
ASLVGDALTL LPRQRLLYAV GAFFLSHLLY TIYFASQMTL SFFWPLPLAL LIVGALLIAV 
IWTRLEELRW PVCTFIAMTL VMVWLAGELW FFRPTAPALS AFTGATLLFI GNIVWLGSHY 
RRRFRADNAI AAACYFAGHF LIVRSLYL