Gene SeD_A3912 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3912 
SymbolgntR 
ID6875114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3751922 
End bp3752983 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content56% 
IMG OID642786872 
Producttranscriptional regulator GntR 
Protein accessionYP_002217500 
Protein GI198245264 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value0.39666 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCATTAA TTCCGCACGT CCGTGGTAAA CTGGGCAAAT CTATCCCTTT TATACCTTTC 
AGGACGATGA AAAAGAAAAG ACCCGTACTT CAGGATGTAG CCGACCGTGT GGGCGTGACC 
AAAATGACGG TCAGCCGTTT TTTGCGTAAT CCGGAGCAGG TCTCCGTCGC GCTGCGGGGT 
AAAATTGCGG CTGCGCTTGA TGAGCTCGGG TACATTCCTA ATCGCGCGCC TGACATTCTT 
TCCAACGCCA CCAGCCGCGC CATTGGCGTT CTGCTGCCGT CTTTAACCAA CCAGGTCTTT 
GCGGAAGTGT TACGCGGCAT TGAGGCTGTC ACCGACGCGC ATGGTTATCA AACCATGCTG 
GCGCACTACG GCTATAAACC GGAGATGGAG CAGGAGCGCC TGGAATCGAT GCTCTCCTGG 
AATATCGACG GCCTGATCCT CACTGAGCGT ACCCATACGC CGCGCACCTT AAAAATGATC 
GAAGTCGCCG GGATTCCGGT GGTGGAACTG ATGGACAGCC AGTCGCCGTG TCTCGATATT 
GCCGTCGGTT TTGACAACTT CGAGGCCGCC CGTCAGATGA CCGCCGCGAT TATCGCGCGT 
GGTCATCGTC ATATCGCCTA TCTGGGGGCG CGCCTCGACG AACGTACTAT CATCAAGCAG 
AAGGGCTATG AACAGGCGAT GCGGGACGCC GGTCTGGTTC CTTACAGTGT GATGATGGAG 
CAATCTTCAT CCTACTCTTC CGGTATCGAA CTCATGCGCC AGGCGCGACG CGAATACCCA 
CAGCTTGACG GTATTTTTTG CACCAACGAT GACCTGGCGG TGGGGGCGGC CTTCGAATGC 
CAGCGCCTGG GGCTAAAAAT CCCGGACGAC ATGGCGATCG CCGGGTTCCA CGGTCATGAC 
ATCGGCCAGG TGATGGAACC GCGTCTGGCA AGCGTCCTGA CGCCGCGCGA GCGAATGGGC 
AGCATTGGCG CGGAACGTTT GTTAGCCCGC ATTCGCGGCG AAACGGTCAC GCCGAAAATG 
TTAGATTTAG GTTTCACCTT GTCACCGGGC GGATCTATTT AG
 
Protein sequence
MSLIPHVRGK LGKSIPFIPF RTMKKKRPVL QDVADRVGVT KMTVSRFLRN PEQVSVALRG 
KIAAALDELG YIPNRAPDIL SNATSRAIGV LLPSLTNQVF AEVLRGIEAV TDAHGYQTML 
AHYGYKPEME QERLESMLSW NIDGLILTER THTPRTLKMI EVAGIPVVEL MDSQSPCLDI 
AVGFDNFEAA RQMTAAIIAR GHRHIAYLGA RLDERTIIKQ KGYEQAMRDA GLVPYSVMME 
QSSSYSSGIE LMRQARREYP QLDGIFCTND DLAVGAAFEC QRLGLKIPDD MAIAGFHGHD 
IGQVMEPRLA SVLTPRERMG SIGAERLLAR IRGETVTPKM LDLGFTLSPG GSI