| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3735 |
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| Symbol | |
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| ID | 6872640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 3585690 |
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| End bp | 3587630 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642786710 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_002217344 |
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| Protein GI | 198243646 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.374197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.0143461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTAA CGACGAAATT CTCAGCTTTT ATCACGCTGC TCACGGGGTT AACGATCTTC
GTGACTCTGA TAGGTTGCTC GCTAAGCTTT TATAACGCCG TACAGTATAA GTATGTCAGC
CGTGTGCAGG CGACGGCGAC AGCCATTGAT ACGCACCTGG TGACCCATGA TATTGTCTCG
CTGACGCCGC AAATCGACGA ACTCATGATC GCTTCCGATA TTGTGCGTGT CGATCTGTTG
CAGGGGGAGC GCAGCGTCTA CAGCCATTCT CGTGCCAGAG GTTATCGGCC AGCCGGCACC
AGCGACATGT ATCGCGAGCT GGTCGTACCG CTGATAAAAC ATCCAGGAAT GTCGCTACGT
CTGGCTTATC AGGACCCGAT GGGTAACTAT TTTCACTCAC TGATCACCAC GGCGCCGCTA
ACGCTGGCGA TCGGTTTTAT CGTTCTGATT TTGTTTTTAT CGGTGCGCTG GCTGCAGCGG
CAGCTTTCCG GGCAGGAGCT TCTGGAAATT CGCTCAACGC GTATTCTGAA CGGCGAACGC
GGGGCGAATG TCCGCGGTTC TGTTTACGAA TGGCCAGCGC GCACCAGTAG CGCGCTTGAT
GTATTGCTTT CCGAAATTCA GTTTGCTCAC GAACAGCGTA GCCGCCTGGA CACCCTCATT
CGCTCCTACG CCGCGCAAGA CACCAACACC GGACTCGGTA ACCGTCTGTT CTTTGATAAC
CAACTGGCGA CGCTGCTGGA AGATCAGGAA AAAGTGGGAG TGCATGGCGT GGTGATGATG
ATCCGCTTGC CAGACTTCAA TCTTCTGCGC GACAGCCTGG GAGGCAATCA GGCGGAAGAG
CAGATGTTTA TGCTTATCAA TCTGCTATCG ACATTTATTA TGCGTTACCC AGGCTCGCTG
CTGGCGCGTT ATCACCGCAG CGACTTTGCC GTGCTGCTAC CGCATCGAAC GCTGAAAGAA
GCGGAAAGTA TTGCCGGACA ACTTTTAAAA GCTGTCGATG CGCTACCGGC TAACAAAATG
CTTGATCGTG ACGATATGGT ACATATCGGC ATTTGCGCCT GGCGCAGCGG ACAGTCCACC
GAGCAGGTGA TGGAACATGC TGAAGCCGCG GCGCGGAACG CCGCCCTGCA GGGGGGAAAT
AGCTGGGCTA TCTACGACGA CACGCTGCCG GAAAAAGGGC GCGGCAATGT GCGCTGGCGC
ACATTGATTG AGCAGACGCT GAACCGGGGC GGACCGCGAC TTTATCAAAA ACCGGCGGTC
ACGCGAGAAG GTCGCGTACA TCATCGGGAA TTGATGTGTC GCATCTATGA CGGTAAAGAA
GAGGTGAGCT CGGCGGAGTA TATGCCGATG GTGTTGCAAT TTGGTTTATC GGAAGAGTAT
GACAGATTAC AAATTAGCCG CCTGATTACG TTGCTGGGCT ACTGGCCGGA TGAAAATCTG
GCAATGCAGT TGACGGTCGA GTCGCTGATT CGTCCGCGTT TTCAGCGCTG GTTGCGCGAT
ACGTTAATGC AGTGTGAAAA ATCACAGCGA AATCGCATAA TTATTGAACT TGCGGAGGCA
GATGTTTGTC AACACATCTG TCGGTTACAA CCCATCCTTC GCTTAGTCAA TGCGCTTGGC
GTTCGGGTGG CGGTGACACA GGCGGGTTTG ACGCTGGTTA GCACGAGCTG GATTAAAGCG
CTCAATGTGG AATTACTCAA GCTGCATCCG AGTCTGGTCA GAAACATTGA GAAGCGAACG
GAAAACCAGC TTCTGGTTCA AAGTCTGGTA GAGGCCTGCG CGGGTACGCC TACGCAGGTT
TACGCGACGG GCGTCCGTTC GCGCGGCGAG TGGCAGACGC TGACAAAACG CGGCGTGGCT
GGCGGGCAGG GTGATTTTTT TGCCTCCTCC CAACTACTTG ACACAAACGT GAAAAAATAT
TCGCAAAGAT ACTCGGTTTA A
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| Protein sequence | MRLTTKFSAF ITLLTGLTIF VTLIGCSLSF YNAVQYKYVS RVQATATAID THLVTHDIVS
LTPQIDELMI ASDIVRVDLL QGERSVYSHS RARGYRPAGT SDMYRELVVP LIKHPGMSLR
LAYQDPMGNY FHSLITTAPL TLAIGFIVLI LFLSVRWLQR QLSGQELLEI RSTRILNGER
GANVRGSVYE WPARTSSALD VLLSEIQFAH EQRSRLDTLI RSYAAQDTNT GLGNRLFFDN
QLATLLEDQE KVGVHGVVMM IRLPDFNLLR DSLGGNQAEE QMFMLINLLS TFIMRYPGSL
LARYHRSDFA VLLPHRTLKE AESIAGQLLK AVDALPANKM LDRDDMVHIG ICAWRSGQST
EQVMEHAEAA ARNAALQGGN SWAIYDDTLP EKGRGNVRWR TLIEQTLNRG GPRLYQKPAV
TREGRVHHRE LMCRIYDGKE EVSSAEYMPM VLQFGLSEEY DRLQISRLIT LLGYWPDENL
AMQLTVESLI RPRFQRWLRD TLMQCEKSQR NRIIIELAEA DVCQHICRLQ PILRLVNALG
VRVAVTQAGL TLVSTSWIKA LNVELLKLHP SLVRNIEKRT ENQLLVQSLV EACAGTPTQV
YATGVRSRGE WQTLTKRGVA GGQGDFFASS QLLDTNVKKY SQRYSV
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