Gene SeD_A3709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3709 
SymboldegS 
ID6873248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3557710 
End bp3558780 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content54% 
IMG OID642786684 
Productserine endoprotease 
Protein accessionYP_002217318 
Protein GI198242513 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.650789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones80 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGTGA AGCTCTTACG TTCGGTCGCA ATAGGTTTAA TTGTCGGCGC TATTCTGTTG 
GCCGTCATGC CTTCTTTGCG CAAAATTAAT CCTATCGCCG TCCCGCAATT CGACAGTACC
GATGAGACGC CAGCCAGTTA TAATTTTGCG GTTCGCCGCG CCGCGCCTGC CGTCGTCAAC
GTCTATAACC GCAGTATGAA CAGTACCGCG CATAATCAAC TGGAGATCCG CACGCTAGGT
TCCGGCGTGA TCATGGATCA ACGCGGTTAT ATTATTACCA ACAAGCACGT GATTAACGAT
GCCGATCAGA TTATCGTCGC GCTACAGGAT GGCCGCGTCT TTGAAGCGCT ACTGGTTGGC
TCCGATTCGC TTACCGATCT GGCGGTGCTG AAGATCAACG CCACTGGCGG GCTGCCTACC
ATCCCGATTA ATACAAAGCG TACACCGCAT ATTGGCGACG TCGTACTGGC TATCGGCAAC
CCATATAATC TGGGACAGAC CATCACCCAG GGGATCATCA GCGCAACGGG TCGTATCGGC
CTGAACCCGA CGGGGCGACA GAATTTTCTC CAGACCGACG CCTCGATTAA CCACGGTAAT
TCCGGCGGCG CGCTGGTCAA CTCGTTAGGC GAACTGATGG GGATCAACAC CCTCTCTTTT
GATAAGAGTA ACGATGGCGA AACGCCGGAA GGCCTTGGTT TTGCGATTCC CTTCCAGCTA
GCCACGAAAA TTATGGATAA GCTTATCCGC GACGGTCGCG TGATTCGCGG CTATATCGGT
ATTGGCGGAC GAGAAATCGC GCCGCTGCAC GCGCAGCAGG GTAGCGGCAT GGACCCGATT
CAGGGCATTG TCGTTAATGA AGTGACGCCA AACGGCCCCG CCGCGCTTGC CGGTATTCAG
GTTAATGATT TGATTATTTC GGTCAATAAT AAACCCGCTG TGTCCGCGCT GGAGACGATG
GATCAGGTGG CGGAAATCCG CCCGGGCTCC GTCATTCCGG TCGTGGTAAT GCGGGATGAT
AAGCAGCTCA CGTTCCAGGT GACGGTGCAG GAATACCCGG CGTCGAACTA A
 
Protein sequence
MFVKLLRSVA IGLIVGAILL AVMPSLRKIN PIAVPQFDST DETPASYNFA VRRAAPAVVN 
VYNRSMNSTA HNQLEIRTLG SGVIMDQRGY IITNKHVIND ADQIIVALQD GRVFEALLVG
SDSLTDLAVL KINATGGLPT IPINTKRTPH IGDVVLAIGN PYNLGQTITQ GIISATGRIG
LNPTGRQNFL QTDASINHGN SGGALVNSLG ELMGINTLSF DKSNDGETPE GLGFAIPFQL
ATKIMDKLIR DGRVIRGYIG IGGREIAPLH AQQGSGMDPI QGIVVNEVTP NGPAALAGIQ
VNDLIISVNN KPAVSALETM DQVAEIRPGS VIPVVVMRDD KQLTFQVTVQ EYPASN