Gene SeD_A3583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3583 
Symbol 
ID6873768 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3442241 
End bp3442903 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content52% 
IMG OID642786571 
Productinner membrane protein YqjA 
Protein accessionYP_002217207 
Protein GI198246123 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0452465 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value0.251546 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTAC TGACTCAATT GCTGAATGCC CTGTGGGCTC AGGACTTTGA AACACTGGCC 
AATCCTTCCA TGATTGGCAT GTTATATTTT GTGTTATTTA TGATTTTGTT TCTGGAAAAT 
GGGCTGCTCC CTGCCGCCTT TTTGCCTGGC GACAGCCTGT TGATCCTGGT CGGCGTGCTG 
ATCGCCAAAG GCGCGATGGG TTTTCCACAA ACCATTTTGC TGCTTACCGT CGCGGCCAGC 
CTGGGTTGCT GGGTGAGCTA TATTCAGGGC CGCTGGCTGG GGAATACCCG CACCGTGCAA 
AACTGGCTCT CTCATCTCCC CGCACATTAT CATCAACGCG CCCATCACCT TTTCCATAAA 
CACGGCCTGT CGGCATTATT GATAGGCCGT TTTATCGCGT TTGTCAGAAC ACTGCTGCCC 
ACCATTGCCG GCATATCCGG CCTGAATAAC GCGCGCTTTC AGTTCTTCAA CTGGATGAGC 
GGCTTGTTGT GGGTGCTTAT CCTGACGTCG CTGGGCTATC TGCTGGGCAA AACGCCCGTC 
TTTATGAAAT ATGAAGATCA GTTAATGTCA TGCCTGATGC TGCTGCCCGT GGTGCTGCTC 
TTTTTTGGCC TGGCGGGTTC ACTGGTCATG CTGTGGAAAA AGAAGTATGG GAGCCGGGGA 
TAA
 
Protein sequence
MELLTQLLNA LWAQDFETLA NPSMIGMLYF VLFMILFLEN GLLPAAFLPG DSLLILVGVL 
IAKGAMGFPQ TILLLTVAAS LGCWVSYIQG RWLGNTRTVQ NWLSHLPAHY HQRAHHLFHK 
HGLSALLIGR FIAFVRTLLP TIAGISGLNN ARFQFFNWMS GLLWVLILTS LGYLLGKTPV 
FMKYEDQLMS CLMLLPVVLL FFGLAGSLVM LWKKKYGSRG