Gene SeD_A3571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3571 
Symbol 
ID6874342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3427208 
End bp3427852 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content54% 
IMG OID642786559 
ProductPadR family transcriptional regulator 
Protein accessionYP_002217195 
Protein GI198243105 
COG category[K] Transcription 
COG ID[COG1695] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value0.333448 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAATC AACATGAAGG GTGTTGCAAA AACCGGGATC ATATGCACGA TGGTTGCTGC 
AAAGATCGAG AACATCAGCA TGAAGGCTGC CATAGCGCGC ATCAGCATGA GAACGCCAGT 
TGCGGCGGCG AGCACCGTCA CGGACACGGC TGTGGTCGTC ATGGACAGGG CGGTGGTCGA 
CGTCAGCGAT TTTTTGGCCA CGGGGAACTT CGGCTGGTCA TTCTTGATAT CCTGACCCGG 
GACGCCAGCC ACGGCTATGA ACTGATTAAA GCGATAGAAA ACCTGACGGG GGGCGGCTAT 
ACGCCAAGCG CTGGCGTGAT CTACCCTACG CTGGATTTTT TACAGGATCA GCAATTTATC 
ACGATTAGCG ACGAAGAAGG CGGGCGGAAA AAAATCGCGA TTACCGCGAA CGGCGCGCAA 
TGGCTTGATG AAAATCGCGA ACACCTGACG CATATTCAGG CGCGGCTAAA AGCCCGTTGT 
GTGGGCATGG AGTTACGTAA AAATCCGCAG ATGAAGCGGG CGCTGGATAA CTTCAAGGCC 
GTGCTGGATC TGCGGATAAA CCACAGCGAT ATCAACGACG CGCAAATCAA ACGCATTATC 
GGCGTGATTG ATCGCGCGGC GCTGGAAATC GCCGAACTGG ATTAA
 
Protein sequence
MQNQHEGCCK NRDHMHDGCC KDREHQHEGC HSAHQHENAS CGGEHRHGHG CGRHGQGGGR 
RQRFFGHGEL RLVILDILTR DASHGYELIK AIENLTGGGY TPSAGVIYPT LDFLQDQQFI 
TISDEEGGRK KIAITANGAQ WLDENREHLT HIQARLKARC VGMELRKNPQ MKRALDNFKA 
VLDLRINHSD INDAQIKRII GVIDRAALEI AELD