Gene SeD_A3554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3554 
Symbol 
ID6871810 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3407471 
End bp3409150 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content54% 
IMG OID642786543 
Productinner membrane protein YqiK 
Protein accessionYP_002217180 
Protein GI198245986 
COG category[S] Function unknown 
COG ID[COG2268] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.695435 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGATG TTTTTGGCAT ATTGCCATCA TGGATGTTTA CCGCCATCGT TGCGGTTATC 
GTCTTACTAA TTATCGGGAT CATTTTTGCT CGCCTCTATC GCCGCGCATC TGCGGAACAG
GCGTTTGTCC GTACCGGGCT TGGCGGGCAA AAAGTGGTGA TGAGCGGCGG CGCTATTGTG
ATGCCAATCT TTCACGAAAT TATTCCGATC AATATGAATA CCCTAAAACT TGAAGTCAGC
CGTGCTACCG TCGACAGCCT GATCACCAAA GATCGTATGC GCGTTGACGT GGTCGTTGCT
TTCTTCGTAC GTGTAAAACC CTCTGTTGAA GGTATTGCCA CCGCCGCACA AACGCTTGGC
CAGCGAACGC TGTCGCCGGA AGATCTTCGT ATGCTGGTTG AGGATAAATT CGTTGACGCC
TTACGCGCTA CCGCGGCCCA GATGACGATG CATGAGCTAC AGGATACGCG TGAAAACTTC
GTTCAGGGCG TACAAAACAC CGTTGCGGAA GATTTGTCGA AAAACGGCCT GGAGCTGGAA
AGTGTCTCAT TAACCAACTT TAACCAAACG TCCAAAGAGC ATTTCAATCC AAACAATGCC
TTTGATGCCG AAGGTCTGAC GAAACTGACG CAGGAAACCG AACGCCGCCG TCGTGAACGT
AATGAAGTGG AACAGGATGT GGAAGTGGCG GTGCGCGAAA AGAACCGCGA CACGCTTGAG
CGCAAGCTGG AAATCGAGCA ACAAGAAGCC TTTATGACTC TGGAGCAGGA GCAACAGGTT
AAAACCCGCA CCGCCGAACA AAACGCTAAA ATTGCCGCTT TTGAGGCCGA GCGCCATCGT
GAAGCAGAAC AGACGCGCAT TCTTGCTGAG CGGCAGATCC AGGAGACGGA GATCGAACGT
GAGCAAGCAG TACGGTCCAG GAAAGTTGAG GCCGAGCGTG AAGTACGTAT TAAAGAGATC
GAACAGCAAC AGGTGACAGA AATCGCCAAC CAGACGAAAT CTATCGCCAT TGCCGCCAAA
TCCGAGCAGC AATCACAAGC AGAAGCGCGC GCCAACGACG CGCTGGCCGA TGCGGTTCGC
GCCCAGCAAA ACGTAGAAAC CACCCGCCAG ACCGCCGAAG CGGATCGCGC CAAGCAGGTC
GCTCTGATCG CCGCGGCGCA GGATGCGGAA ACCAAAGCGG TCGAACTGAC CGTTCGGGCA
AAAGCAGAGA AAGAAGCGGC AGAATTGCAA GCCGCCGCCA TCATCGAACT GGCGGAAGCA
ACGCGTAAAA AAGGTCTGGC GGAAGCCGAA GCGCAACGGG CGCTGAATGA CGCTATCAAC
GTACTATCTG ACGAACAAAC CAGCCTCAAA TTTAAACTAG CGCTCTTACA ATCGTTGCCT
GCTGTTATTG AGAAGTCTGT TGAACCGATG AAATCCATCG ACGGCATTAA GATTATTCAG
GTCGATGGCC TCAATCGCGG CGCGACGGCG GGCGACGTCG CCGCTGGCGG CGCTAACGGG
GGAAACCTGG CGGAACAAGC GTTATCTGCC GCGCTCACCT ATCGTACCCA GGCACCGCTG
ATCGATTCGC TGTTAAACGA GATTGGCATC GCTGGCGGCT CGCTAAAGGC GCTGACCACG
CCGTTGGTTT CATCGGCAAC GGATGAGATT AATCGCGAAG CAACGGTAAA AGAGCAATAA
 
Protein sequence
MDDVFGILPS WMFTAIVAVI VLLIIGIIFA RLYRRASAEQ AFVRTGLGGQ KVVMSGGAIV 
MPIFHEIIPI NMNTLKLEVS RATVDSLITK DRMRVDVVVA FFVRVKPSVE GIATAAQTLG
QRTLSPEDLR MLVEDKFVDA LRATAAQMTM HELQDTRENF VQGVQNTVAE DLSKNGLELE
SVSLTNFNQT SKEHFNPNNA FDAEGLTKLT QETERRRRER NEVEQDVEVA VREKNRDTLE
RKLEIEQQEA FMTLEQEQQV KTRTAEQNAK IAAFEAERHR EAEQTRILAE RQIQETEIER
EQAVRSRKVE AEREVRIKEI EQQQVTEIAN QTKSIAIAAK SEQQSQAEAR ANDALADAVR
AQQNVETTRQ TAEADRAKQV ALIAAAQDAE TKAVELTVRA KAEKEAAELQ AAAIIELAEA
TRKKGLAEAE AQRALNDAIN VLSDEQTSLK FKLALLQSLP AVIEKSVEPM KSIDGIKIIQ
VDGLNRGATA GDVAAGGANG GNLAEQALSA ALTYRTQAPL IDSLLNEIGI AGGSLKALTT
PLVSSATDEI NREATVKEQ