| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3522 |
|---|
| Symbol | |
|---|
| ID | 6873795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 3380167 |
|---|
| End bp | 3381474 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642786512 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002217149 |
|---|
| Protein GI | 198244888 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.392469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTTG AATATATTTA CCCAATAATT GTTTTATTTG GCAGCTTTGC CATTATGCTG
GCGGTCGGCG TTCCTATTAC ATTCGCTATC GGGCTGTCGT CCTTATTCTC AATCCTGATA
GCCCTTCCCC CGGATGCGGC AATCTCGGTT ATTTCGCAAA AAATGACCGT CGGTCTCGAT
GGCTTTACGC TGCTGGCGAT CCCCTTTTTT GTGTTAGCCG GCAATATCAT GAATACCGGG
GGAATCGCCC GGCGCCTGGT GAATCTGGCT CAGGCGTTAG TTGGCCGCCT TCCCGGTTCG
CTGGCGCACT GCAATATTCT GGCGAACACC CTGTTTGGCG CGATATCCGG CTCGGCTGTC
GCTTCTGCGG CCGCGGTGGG CGGCATCATG TCGCCATTAC AGGAAAAAGA GGGCTACTCT
CCGGCGTTCT CTACGGCGAT CAACGTCGCT TCGGCGCCGA TTGGCCTGAT GATCCCGCCC
AGCAATGTGC TAATTGTCTA TTCGCTGGCT AGCGGCGGCA CCTCTGTCGC CGCCCTGTTT
TTGGCGGGCT ACCTGCCCGG CATCTTAACC GCGCTGGCTT TAATGACGGT AGCGGCGCTG
TATGCCCATC GCCACCATTA CCCGGTTGCC GAACGCATCA ACCTGCGGCA GTTTCTGTCG
GTATTCCGCG ATTCATTGCC CAGCCTGTTG CTGATATTTA TTATTATCGG CGGCATTATC
GGCGGCGTAT TTACGCCAAC AGAGGCCTCT GCGATCGCGG TAATCTATAG CCTGGCGCTG
GCGGCCATTT ATCGAGAAAT TAATGTGAGT AAGTTGCGCG ATATTCTGCT GGATTCGGTA
GTAACCAGCT CTATTGTTCT CTTACTGGTC GGCTGCTCAA TGGGAATGTC ATGGGCGATG
ACCAATGCTG ATGTTCCTGA ACTGATTAAT GAAATGATTA CCAGCGTGTC CGAAAATAAA
TGGGTCATCT TGCTGATTAT CAATCTCATT TTGTTACTCG TCGGGACGTT TATGGATATT
ACCCCGGCTA TTCTGATCTT TACGCCTATT TTCCTTCCCA TTGCTCAACA TCTGGGAATC
GACCCTGTCC ATTTTGGCAT TATTATGGTT TTCAATTTAA CCATCGGACT GTGTACGCCC
CCGGTAGGCA CTATTTTGTT CGTCGGTTGC AGTATCGGCA AAATCAGTAT TGATAAAGTC
GTCAAACCGC TATTACCGAT GTTTCTGGCA CTCTTTGTGG TCATGGCGAT GATTTGCTAC
TTCCCGCAGT TGAGTCTGCT GCTTCCCACG CTGTTTGCTC CTTCCTGA
|
|---|
| Protein sequence | MDFEYIYPII VLFGSFAIML AVGVPITFAI GLSSLFSILI ALPPDAAISV ISQKMTVGLD
GFTLLAIPFF VLAGNIMNTG GIARRLVNLA QALVGRLPGS LAHCNILANT LFGAISGSAV
ASAAAVGGIM SPLQEKEGYS PAFSTAINVA SAPIGLMIPP SNVLIVYSLA SGGTSVAALF
LAGYLPGILT ALALMTVAAL YAHRHHYPVA ERINLRQFLS VFRDSLPSLL LIFIIIGGII
GGVFTPTEAS AIAVIYSLAL AAIYREINVS KLRDILLDSV VTSSIVLLLV GCSMGMSWAM
TNADVPELIN EMITSVSENK WVILLIINLI LLLVGTFMDI TPAILIFTPI FLPIAQHLGI
DPVHFGIIMV FNLTIGLCTP PVGTILFVGC SIGKISIDKV VKPLLPMFLA LFVVMAMICY
FPQLSLLLPT LFAPS
|
|---|
| |