Gene SeD_A3478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3478 
Symbol 
ID6874939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3340204 
End bp3341082 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content44% 
IMG OID642786472 
Productputative amidohydrolase 
Protein accessionYP_002217109 
Protein GI198242511 
COG category[R] General function prediction only 
COG ID[COG0388] Predicted amidohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0870847 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones89 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACGTA ATTTTACTGT TTCAGCCTGT CAGTATATTG TTACCGAAAT AAACACTTTT 
GAAGATTTCA TAACAAAGGT AAGGATACTT CTTAATAAAA GTCAGGGTGC TGATGTCGTT 
ATCTTCCCGG AGCTATTTAC CATTGAGTTA TTTACATTAT TGAAAAAATG GCAAGAAAGA 
CCCATTTCAC ACCTTACTTT AATTGATCAG TTCACGGATG CCTATAAGCA GCTTTTTCAA 
CAGGAAGCGA AAGAAAGAGG ACAGTTCATT ATTGCTGGCT CTCATCTGGA GCAGACTGGA 
GCAGATCGCT ATGAGAATGT TGCGCATATA TGGGGACCCG ATGGCGAACA TTATGCTCAC 
AGTAAGACGC ATATCTTCCC GGCTGAACGG GGTTGGTATA CTCAGGAAGG CGATAAAATG 
GCTGTTTTTC AACTGCCATT TGCAAAGGTG GGTTTTAATA TTTGTTATGA AGCAGAAATA 
CCGGAGTGTG CCGCGACGCT GGCGGAACAG GGTGCGGAGT TAATTTTAAC GCCTTCCGCT 
ACGTTTACTG AACAGGGATT TTGGCGAGTC AGGCATTGTT GCCACGCACG TTGTATTGAA 
AATCAAATTT ATCTTGTTCA CTGTTGCCTG GGCGGAAACC CGGGCGGGCC ACTGCCAGGC 
TGCTGGGCCC GAAGTTCAAT TTTAAGCCCC TGTGATGTCG TGTGGAAAAA TCCACAAGGT 
ATTATCGCAG AGGCGCACGT CAATCAAGAG GATGTCATTT CAGGAGAAAT TAACCTCGAT 
GTTCTATATG AAAATAGACT TGGGGGGGCA GCAACAACGT TCAAGGACAG ACGCAGAAAA 
GCAGGCATAT ATAATATCTG GCCATCACAC ATTAAATAA
 
Protein sequence
MSRNFTVSAC QYIVTEINTF EDFITKVRIL LNKSQGADVV IFPELFTIEL FTLLKKWQER 
PISHLTLIDQ FTDAYKQLFQ QEAKERGQFI IAGSHLEQTG ADRYENVAHI WGPDGEHYAH 
SKTHIFPAER GWYTQEGDKM AVFQLPFAKV GFNICYEAEI PECAATLAEQ GAELILTPSA 
TFTEQGFWRV RHCCHARCIE NQIYLVHCCL GGNPGGPLPG CWARSSILSP CDVVWKNPQG 
IIAEAHVNQE DVISGEINLD VLYENRLGGA ATTFKDRRRK AGIYNIWPSH IK