Gene SeD_A3439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3439 
Symbol 
ID6875524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3305161 
End bp3305724 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content52% 
IMG OID642786433 
Producthypothetical protein 
Protein accessionYP_002217071 
Protein GI198244528 
COG category[K] Transcription 
COG ID[COG1678] Putative transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.623694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.00691193 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATTTAC AGCATCACTT TCTTATTGCC ATGCCTGCGC TCCAGGACCC GATTTTCCGC 
CGTTCCGTGG TGTATATTTG CGAGCACAAC CAGGACGGCG CTATGGGGAT TATTGTTAAT 
AAGCCTTTGG AAAATCTGCA AATTGAAGGG ATTCTGGAAA AACTAAAAAT TACGCCGGAA 
CCGCGCGATT CGTCAATTCG TCTTGATAAA GCCGTGATGC TCGGCGGCCC GCTGGCGGAA 
GATCGCGGAT TTATTCTCCA TACTCCGCCG TCACGTTTCG CCTCCAGCAT TCGTATCTCA 
GACAATACCG TGATTACCAC CTCCCGCGAT GTGCTGGAAA CGTTAGGTAC CCAACAACAG 
CCTTCCGATG TACTGGTCGC GCTGGGCTAC GCCTCCTGGG ATAAAGGCCA GCTTGAACAA 
GAGCTGCTTG ATAACGCCTG GCTTACCGCG CCCGCCGATC TCAATATTTT GTTCAAAACA 
CCCATTGCCG AGCGCTGGCG CGAAGCGGCA AAACTTATTG GCATTGATAT TCTGACCATG 
CCTGGCGTTG CGGGGCACGC CTGA
 
Protein sequence
MNLQHHFLIA MPALQDPIFR RSVVYICEHN QDGAMGIIVN KPLENLQIEG ILEKLKITPE 
PRDSSIRLDK AVMLGGPLAE DRGFILHTPP SRFASSIRIS DNTVITTSRD VLETLGTQQQ 
PSDVLVALGY ASWDKGQLEQ ELLDNAWLTA PADLNILFKT PIAERWREAA KLIGIDILTM 
PGVAGHA