Gene SeD_A3436 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3436 
SymbolendA 
ID6871195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3302463 
End bp3303170 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content56% 
IMG OID642786430 
Productendonuclease I 
Protein accessionYP_002217068 
Protein GI198242452 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00127424 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.00168464 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTACCGTA ATTTTTCTTT TGCCGCTGCG TTGCTGGCCG CAGCGTTTTC AGGCCAGGCC 
CTGGCCGATG GCATTAACAA TTTTTCTCAG GCCAAAGCGG CGAGCGTCAA AGTCAATGCC 
GACGCGCCCG GCAGCTTTTA CTGCGGGTGC CAAATCCGCT GGCAGGGTAA AAAAGGCGTC 
GTAGACCTGG AGTCCTGCGG CTATAAGGTG CGTAAAAACG AGAATCGCGC CAGACGCATT 
GAGTGGGAGC ACGTTGTCCC CGCCTGGCAA TTCGGTCATC AGCGCCAGTG CTGGCAGGAC 
GGCGGGCGAA AAAACTGCGC TAAAGACCCG GTCTACCGCA AAATGGAAAG CGATATGCAT 
AACCTGCAAC CCGCGATTGG CGAAGTGAAT GGCGATCGCG GCAACTTTAT GTATAGCCAG 
TGGAACGGCG GCGAAGGTCA GTACGGGCAG TGCGCCATGA AAGTAGATTT CAAAGCGAAG 
CTCGCCGAGC CGCCCGCCCG CGCCCGTGGC GCAATCGCCC GCACTTATTT TTATATGCGC 
GACCAATACC AACTGAAACT TTCCCGCCAA CAAACGCAGC TTTTTAACGT CTGGGATAAG 
CAGTACCCCG TTACCGCCTG GGAGTGCGAG CGCGATGCGC GTATCGCGAA GGTCCAGGGT 
AATCATAATC CCTATGTGCA ACGCGCTTGC CAGGCGCGAA AGAGCTAA
 
Protein sequence
MYRNFSFAAA LLAAAFSGQA LADGINNFSQ AKAASVKVNA DAPGSFYCGC QIRWQGKKGV 
VDLESCGYKV RKNENRARRI EWEHVVPAWQ FGHQRQCWQD GGRKNCAKDP VYRKMESDMH 
NLQPAIGEVN GDRGNFMYSQ WNGGEGQYGQ CAMKVDFKAK LAEPPARARG AIARTYFYMR 
DQYQLKLSRQ QTQLFNVWDK QYPVTAWECE RDARIAKVQG NHNPYVQRAC QARKS