Gene SeD_A3428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3428 
Symbol 
ID6873748 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3294154 
End bp3294903 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content45% 
IMG OID642786422 
ProductUxu operon transcriptional regulator 
Protein accessionYP_002217060 
Protein GI198244855 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value0.000900091 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGAACAAA TTTTAACCAA GCGGCGCTAT TTTGATATAG GGCTGCAAAT AGAAGAACTA 
CTCTATTCAG GGGTATTTAA AGCTGGCGAG CGACTTCCGG CGGAGAGAGA ACTCAGCGAG
CGTTTTCAAA CCAGCCGCAC GACGATTCGT GAGGCGATTA TTATGCTTGA GCTGAAGGGG
GTGGTAGAGG TTAAGCAAGG CGCAGGCACT TACTTTATTG ATAGTCTGGA AAAAATCAAT
CAAAAAGCGC TCTTGCCTTA CTCAGACATT GGCCCCTTTG AATTGCTACA GGCCCGGCAG
GTTATCGAAA GTAACATCAC CGGTTTTGCC GCTACGCAAA TAAGATTTAA TGAGCTTAAG
CAGCTTAAAC GTATTATTGA GCAGCAGGAA AAGCAGATTG GCGGCGACAG CGACAAATTT
GAAGAACTGG ATCGTCAGTT CCACAATATC ATCGCGGAAT CCACGCAAAA TCGTGTATTA
ATGAAACAAT CTGCCGAGCT GTGGCGGGCT GTCAGGACCG AAAATCCGCG CTGGAAGCAG
TTAAACTATA AGTATTTACA TAAGAAAGAG TTAAGAATGA AATGGGTGGA AGATCACCGT
AGTATCTTCC TTGCATTGCA AAAACGCGAT GCTGAGCAGG CCAGACAGGC CTCGTGGACC
CATCTTGAAA ACAGTAAAAA TGAGCTGGTA AAAATCTTCC AACAGGATGA TTCGCTGGAA
GATTTTGATG ATTTTTTCTT CGCCACCTGA
 
Protein sequence
MEQILTKRRY FDIGLQIEEL LYSGVFKAGE RLPAERELSE RFQTSRTTIR EAIIMLELKG 
VVEVKQGAGT YFIDSLEKIN QKALLPYSDI GPFELLQARQ VIESNITGFA ATQIRFNELK
QLKRIIEQQE KQIGGDSDKF EELDRQFHNI IAESTQNRVL MKQSAELWRA VRTENPRWKQ
LNYKYLHKKE LRMKWVEDHR SIFLALQKRD AEQARQASWT HLENSKNELV KIFQQDDSLE
DFDDFFFAT