Gene SeD_A3400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3400 
Symbol 
ID6875758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3269388 
End bp3269984 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content58% 
IMG OID642786402 
Productputative ligase 
Protein accessionYP_002217040 
Protein GI198243316 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0212] 5-formyltetrahydrofolate cyclo-ligase 
TIGRFAM ID[TIGR02727] 5,10-methenyltetrahydrofolate synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00411239 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.605032 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAAC TTCCCGAACT CTCTTTATCA CGACAAGAAA TCCGCCGAAT GATTCGGCAA 
CGTCGTCGTG CGCTGACGCC AGAGCAGCAA CGCCGCTTTG GTCAACAGGC CGCCGCCCGA
ATGCTCAGCT TTCCTCCCGT CGTGATGGCG CACACTGTCG CCGTGTTTCT CTCCTTTGAT
GGCGAACTCG ACACCCAGCC GCTGATTGAA CAGCTATGGC GAGCAGGCAA GCGCGTCTAC
CTTCCGGTTC TTCATCCCTT CAGCCCTGGC AACCTCCTGT TCCTGCACTA TCATCCGCAG
AGTGCGCTGG TGACCAACCG CTTAAAGATC CGGGAGCCAC GGCTTGATGT CCGCGACGTA
TTGCCGCTGG CAAAGCTGGA TGTGCTGGTA ACGCCATTAG TGGCGTTTGA CGAAGGCGGG
CAGCGCCTGG GGATGGGCGG CGGATTTTAT GACCGTACGT TGCAAAACTG GCAGCAGCAT
AAGATCCAGC CCGTGGGCTA CGCGCATGAT TGCCAGTTAG TAGAAAAACT GCCAGTTGAA
GAGTGGGATA TCCCGCTGCC TGCGGTGGTG ACGCCGTCCA AAATTTGGGA GTGGTAG
 
Protein sequence
MTQLPELSLS RQEIRRMIRQ RRRALTPEQQ RRFGQQAAAR MLSFPPVVMA HTVAVFLSFD 
GELDTQPLIE QLWRAGKRVY LPVLHPFSPG NLLFLHYHPQ SALVTNRLKI REPRLDVRDV
LPLAKLDVLV TPLVAFDEGG QRLGMGGGFY DRTLQNWQQH KIQPVGYAHD CQLVEKLPVE
EWDIPLPAVV TPSKIWEW