| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3378 |
|---|
| Symbol | recJ |
|---|
| ID | 6875145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 3249037 |
|---|
| End bp | 3250770 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642786381 |
|---|
| Product | ssDNA exonuclease RecJ |
|---|
| Protein accession | YP_002217019 |
|---|
| Protein GI | 198243236 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACAAC AGAGACAACT TCGTCGGCGC GAGGCTGATG AGACGGCGGA ACTCCCCGCC
GATCTTCCTC CATTACTACG ACGTTTATAT GCCAGCCGGG GCGTTCGTAG CGCCCGCGAA
CTGGAGCGCA GCGTGAAAGG AATGCTGCCC TGGCAACAGC TTAGCGGCAT AGATAACGCG
GTGGAGATCC TCTACAACGC CTTTCGCGAA GGTATCCGCA TTATTGTTGT TGGCGATTTT
GACGCCGACG GCGCGACCAG TACTGCGCTA AGCGTATTGG GAATGCGTGC GTTGGGATGT
GACAACATCA GTTATCTGGT GCCTAATCGC TTTGAGGACG GCTACGGTTT AAGCCCGGAA
GTGGTCGATC AGGCGAAGGC GCGCGGCGCG CAGCTTATCG TCACCGTAGA CAACGGCATT
TCATCCCACG CCGGCGTAGC GCATGCAAAG ACGTTGGGGA TTCCGGTGAT CGTGACCGAT
CACCACCTGC CAGGCGACAC GTTGCCGGAT GCCGAAGCGA TTATTAATCC CAATCTGCGC
GACTGCGAAT TCCCGTCTAA GTCGCTGGCG GGCGTCGGCG TGGCGTTTTA CCTGATGCTG
GCGTTGCGAA CATTTTTGCG CGACAAAGGA TGGTTCGACG AGCGCAACAT TGCGCCGCCG
AATTTGGCGG AGCTGCTGGA TTTAGTGGCG TTGGGAACGG TAGCAGACGT TGTGCCGCTG
GACGCTAACA ACCGTATTCT GACCTGGCAA GGGCTAAGTC GTATTCGTGC CGGGAAATGC
CGTCCGGGAA TTAAAGCGTT GCTGGAGATA TCGAATCGCG ATCCGCAGCA GCTTGCCGCC
AGTGATTTAG GCTTCGCGTT GGGGCCTCGC CTGAATGCCG CCGGCAGGCT GGATGATATG
TCCGTTGGTG TGGCGTTACT GTTGTGCGAT AACCTCGGCG AAGCGCGTGT TCTGGCCAGC
GAGCTGGATG CGCTTAACCA GACGCGCAAA GAAATAGAGC AGGGGATGCA GGCGGAAGCG
CTTATCCTGT GCGAAAAGCT TGAGCGCAGT AGTGAAACGC TTCCGGGCGG TCTGGCGATG
TATCATCCTG AATGGCACCA GGGCGTGGTC GGAATTCTGG CGTCGCGCAT TAAAGAGCGT
TTTCACCGCC CGGTGATCGC CTTTGCGCCT GCGGGCGACG GCACGCTAAA AGGCTCAGGC
CGATCGATTC AGGGGTTGCA TATGCGCGAT GCGCTGGAAC GGCTGGATAC GCTTTACCCT
GATCTGATGA TCAAGTTCGG CGGTCATGCG ATGGCGGCGG GATTGTCGCT GGAAGAGCAT
AAATTCGAGC AGTTTCAGCA ACGTTTTGGC GAGCTGGTGA CGGAATGGCT CGATCCTGCC
CTGTTGCAAG GCGAGGTGAT CTCCGATGGT CCATTAAGCG CGGCGGAGAT GTCTATGGAA
GTGGCGCAAC TGTTGCGGGA TGCCGGACCG TGGGGGCAAA TGTTCCCGGA ACCGTTATTC
GATGGTCGTT TCCGTCTGCT ACAGCAGCGT CTGGTGGGCG AGCGTCACCT CAAGGTGATG
GTGGAGCCTG TCGGCGGCGG CCCGCTGTTG GATGGCATCG CATTTAATAT TGATACGACC
TGTTGGCCGG ATAACGGCGT GCGGGAGGTA GAACTGGCTT ATAAACTGGA CATTAACGAG
TTTCGCGGCA ACCGTAGTTT ACAGATTATT ATCGATGATA TTTGGCCGCT ATGA
|
|---|
| Protein sequence | MKQQRQLRRR EADETAELPA DLPPLLRRLY ASRGVRSARE LERSVKGMLP WQQLSGIDNA
VEILYNAFRE GIRIIVVGDF DADGATSTAL SVLGMRALGC DNISYLVPNR FEDGYGLSPE
VVDQAKARGA QLIVTVDNGI SSHAGVAHAK TLGIPVIVTD HHLPGDTLPD AEAIINPNLR
DCEFPSKSLA GVGVAFYLML ALRTFLRDKG WFDERNIAPP NLAELLDLVA LGTVADVVPL
DANNRILTWQ GLSRIRAGKC RPGIKALLEI SNRDPQQLAA SDLGFALGPR LNAAGRLDDM
SVGVALLLCD NLGEARVLAS ELDALNQTRK EIEQGMQAEA LILCEKLERS SETLPGGLAM
YHPEWHQGVV GILASRIKER FHRPVIAFAP AGDGTLKGSG RSIQGLHMRD ALERLDTLYP
DLMIKFGGHA MAAGLSLEEH KFEQFQQRFG ELVTEWLDPA LLQGEVISDG PLSAAEMSME
VAQLLRDAGP WGQMFPEPLF DGRFRLLQQR LVGERHLKVM VEPVGGGPLL DGIAFNIDTT
CWPDNGVREV ELAYKLDINE FRGNRSLQII IDDIWPL
|
|---|
| |