Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3363 |
Symbol | |
ID | 6873685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3236275 |
End bp | 3238764 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642786367 |
Product | fimbrial usher protein |
Protein accession | YP_002217006 |
Protein GI | 198244928 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0678454 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATTA CCCGGCTTGC CATTCTGATT ACCCTGACAT TTTCCGTCCT GAAGTCGCAG GCCACGGAGT TCAATGCCAG CCTGCTGGAC AGCGGGAACC TGTCTAACGT GGACCTCACG GCCTTCAGCC GCGAGGGGTA TGTGGCGCCC GGTAACTATA TTCTCGATAT CTGGCTCAAT GACCAGCCGG TACGGGAACA GTATCCGGTC AGGGTTGTAC CGGTTGCCGG ACGCGACGCG GCCGTCATCT GTGTGACAAC AGACATGGTG GCCATGCTGG GTCTTAAGGA TAAGATTATT CATGGCCTGA AACCCGTTAC CGGTATCCCG GACGGGCAAT GCCTTGAGCT GCGCTCCGCT GACAGTCAGG TACGGTACAG CGCTGAAAAT CAGCGTCTGA CCTTCATTAT TCCCCAGGCC TGGATGCGTT ATCAGGACCC GGACTGGGTG CCCCCTTCAC GCTGGAGCGA CGGCGTCACC GCCGGCCTGC TTGATTACAG CCTGATGGTC AACCGCTATA TGCCGCAGCA GGGGGAAACC TCTACCAGCT ACAGCCTCTA CGGCACCGCC GGGTTTAATC TCGGCGCCTG GCGATTGCGG AGCGATTACC AGTACAGCCG TTTTGACAGT GGGCAGGGCG CATCACAGTC CGATTTTTAT CTGCCGCAGA CGTATCTGTT CCGTGCCTTG CCAGCACTGC GCTCAAAACT GACGCTCGGA CAGACGTACC TCAGCTCCGC TATTTTTGAC TCCTTCCGCT TTGCCGGGCT CACTTTGGCC AGCGATGAGC GCATGCTGCC GCCCTCTCTT CAGGGGTATG CCCCGAAAAT TAGCGGCATT GCGAACAGTA ATGCACAGGT CACCGTCAGC CAGAATGGTC GCATTCTGTA CCAGACCCGG GTGTCGCCGG GGCCTTTTGA GCTTCCCGAC CTGAGCCAGA ATATCAGCGG CAACCTGGAT GTCAGCGTCC GGGAAAGCGA CGGTAGCGTC CGGACCTGGC AGGTCAACAC GGCCAGCGTC CCCTTTATGG CACGCCAGGG ACAGGTTCGC TATAAGGTGG CCGCCGGACG TCCGCTGTAC GGCGGGACGC ATAACAACAG CACGGTCAGC CCTGACTTTC TGCTCGGGGA GGCCACCTGG GGAGCATTTA ACAACACGTC GCTGTATGGC GGCCTCATTG CCTCCACCGG CGACTACCAG TCCGCGGCGC TCGGGATCGG CCAGAATATG GGGCTGTTGG GCGCTCTGTC TGCGGACGTC ACCCGCTCAG ATGCGCGGTT GCCGCATGGG CAGAAGCAGT CCGGTTACAG CTACCGTATC AACTATGCCA AAACGTTTGA TAAAACCGGC AGTACCCTGG CGTTCGTCGG ATACCGCTTC TCGGACCGCC ATTTTCTGTC CATGCCGGAG TACCTGCAGC GTCGGACCAC TGACGGCGGC GATGCATGGC ATGAAAAACA GAGCTACACC GTGACTTATA GCCAGTCCGT TCCGGTACTC AACATGAGCG CGGCCCTCTC GGTAAGCCGG CTCAATTACT GGAACGCACA GTCCAACAAT AACTACATGC TCAGCCTCAA CAAGGTGTTC AGTCTCGGCG ACCTTCAGGG ACTCTCGGCC TCGGTGTCGT TTGCCCGTAA CCAGTACACC GGCGGGGGTA GCCAGAACCA GGTCTACGCC ACCATCAGTA TCCCGTGGGG AGACAGTCGC CAGGTGAGTT ACAGCGTACA GAAAGATAAC CGGGGCGGCC TGCAGCAGAC CGTGAATTAC AGCGATTTCC ATAACCCGGA CACTACATGG AACATCAGCG CCGGTCATAA CCGTTATGAC ACCGGCAGCA ACAGCAGCTT CAGCGGCAGC GTGCAGAGCC GTCTGCCGTG GGGCCAGGCG GCAGCGGACG CCACCCTGCA GCCCGGACAG TACCGCAGCC TGGGCCTGAG CTGGTACGGC TCGGTGACTG CCACCGCCCA CGGTGCCGCT TTCAGCCAGT CGATGGCCGG GAATGAGCCC CGCATGATGA TAGATACCGG AGACGTGGCC GGTGTGCCGG TGAACGGCAA CAGCGGGGTG ACCAACCGCT TCGGGGTGGG CGTGGTGAGC GCCGGCAGCA GCTATCGCCG CAGCGATATT TCGGTTGATG TGGCCGCCCT GCCGGAGGAC GTGGACGTCA GCAGCTCCGT CATCAGTCAG GTACTGACGG AGGGCGCGGT GGGCTACCGG AAGATTGACG CCAGCCAGGG GGAGCAGGTG CTCGGTCATA TCCGGCTGGC TGATGGCGCA AGTCCGCCGT TTGGCGCCCT GGTGGTGTCC GGGAAAACCG GCAGAACCGC GGGGATGGTC GGAGATGGCG GTCTGGCCTA CCTGACAGGT CTCAGCGGGG AAGACCGCCG GACCCTGAAT GTGTCCTGGG ATGGCCGGGT GCAGTGCAGA CTCACCCTGC CGGAAACGGT GACACTCAGC CGGGGGCCGC TGTTACTGCC CTGCAGATAA
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Protein sequence | MKITRLAILI TLTFSVLKSQ ATEFNASLLD SGNLSNVDLT AFSREGYVAP GNYILDIWLN DQPVREQYPV RVVPVAGRDA AVICVTTDMV AMLGLKDKII HGLKPVTGIP DGQCLELRSA DSQVRYSAEN QRLTFIIPQA WMRYQDPDWV PPSRWSDGVT AGLLDYSLMV NRYMPQQGET STSYSLYGTA GFNLGAWRLR SDYQYSRFDS GQGASQSDFY LPQTYLFRAL PALRSKLTLG QTYLSSAIFD SFRFAGLTLA SDERMLPPSL QGYAPKISGI ANSNAQVTVS QNGRILYQTR VSPGPFELPD LSQNISGNLD VSVRESDGSV RTWQVNTASV PFMARQGQVR YKVAAGRPLY GGTHNNSTVS PDFLLGEATW GAFNNTSLYG GLIASTGDYQ SAALGIGQNM GLLGALSADV TRSDARLPHG QKQSGYSYRI NYAKTFDKTG STLAFVGYRF SDRHFLSMPE YLQRRTTDGG DAWHEKQSYT VTYSQSVPVL NMSAALSVSR LNYWNAQSNN NYMLSLNKVF SLGDLQGLSA SVSFARNQYT GGGSQNQVYA TISIPWGDSR QVSYSVQKDN RGGLQQTVNY SDFHNPDTTW NISAGHNRYD TGSNSSFSGS VQSRLPWGQA AADATLQPGQ YRSLGLSWYG SVTATAHGAA FSQSMAGNEP RMMIDTGDVA GVPVNGNSGV TNRFGVGVVS AGSSYRRSDI SVDVAALPED VDVSSSVISQ VLTEGAVGYR KIDASQGEQV LGHIRLADGA SPPFGALVVS GKTGRTAGMV GDGGLAYLTG LSGEDRRTLN VSWDGRVQCR LTLPETVTLS RGPLLLPCR
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