Gene SeD_A3347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3347 
Symbol 
ID6872026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3222729 
End bp3223436 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content54% 
IMG OID642786351 
Productputative racemase 
Protein accessionYP_002216990 
Protein GI198242718 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1794] Aspartate racemase 
TIGRFAM ID[TIGR00035] aspartate racemase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.042763 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAACGA TCGGGCTGTT GGGGGGGATG AGCTGGGAAT CGACTATCCC TTATTACCGT 
TTAATCAATG AAGGCATTAA ACAGCAGCTG GGAGGCCTGC ACTCGGCGAG CTTACTGCTG
CATAGCGTAG ATTTCCACGA TATTGAAGTA TGTCAACGCC GCGGCGAGTG GGATAAAGCG
GGCGATATCC TGGCGCAGGC CGCGCAGGGG TTACAGCAGG CGGGCGCAGA AGGCATTGTG
CTGTGTACCA ACACCATGCA TAAAATCGCG CACATTATTG AATCTCGTTG TTCTCTGCCT
TTCCTACACA TCGCGGATGC TACCGGGCGA GCTATCGCCC GTCAGGGGTT GCATCGCGTG
GCGCTATTGG GGACTCGCTA TACGATGGAA CAGGATTTTT ATCGCGGGCG GCTGGAACAG
CAATTTGCGA TTGAGACCAT CGTGCCGGAG GCGGACGATC GGGCGCGTAT CAATCAGGTC
ATTTTTGACG AGCTCTGTCA GGGGACATTC ACTGACGCGT CGCGCCACTA TTATTTACAG
GTTATCGAAC AACTGGCTGC GCAAGGCGCG CAGGGCGTTA TTTTTGGCTG CACTGAAATA
GGTTTGCTTG TTCCCCAGAC GCAAAGCGCG CTACCGGTTT TCGATACCAC GGCAATTCAT
GCCGCAGATG CCGTGAGCTT TATGCTTTCG TCATCGGCCC CAGAATAA
 
Protein sequence
MKTIGLLGGM SWESTIPYYR LINEGIKQQL GGLHSASLLL HSVDFHDIEV CQRRGEWDKA 
GDILAQAAQG LQQAGAEGIV LCTNTMHKIA HIIESRCSLP FLHIADATGR AIARQGLHRV
ALLGTRYTME QDFYRGRLEQ QFAIETIVPE ADDRARINQV IFDELCQGTF TDASRHYYLQ
VIEQLAAQGA QGVIFGCTEI GLLVPQTQSA LPVFDTTAIH AADAVSFMLS SSAPE