Gene SeD_A3346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3346 
Symbol 
ID6872636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3221822 
End bp3222757 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content58% 
IMG OID642786350 
ProductDNA-binding transcriptional regulator LysR 
Protein accessionYP_002216989 
Protein GI198242756 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.0358858 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCG TTAATTTACG TCACATTGAA ATTTTTCATG CCGTAATGAC CGCCGGAAAT 
CTCACCGAAG CGGCGCGGCT GCTGCATACC TCGCAGCCTA CCGTCAGTCG CGAGCTGGCG 
CGTTTTGAGA AAGTGCTGGG ATTAACGCTG TTTGAGCGCA CACGCGGGCG CTTACATCCG 
ACGGTGCAAG GGCTACGCCT GTTCGAAGAG GTACAACGCT CCTGGTATGG GTTGGATCGC 
ATCGTCAGCG CGGCGGAAAG TCTGCGCGAG TTCCGTCAGG GCGAACTCTC TATCGCCTGC 
CTGCCGGTCT TTTCACAATC CTTTTTGCCG CCGTTACTAC CGCCTTTTCT GGCACGTTAT 
CCGGATGTCA GCCTGAATAT TGTGCCGCAG GAGTCGCCGT TGCTGGAAGA GTGGCTCTCC 
GCCCAGCGCC ACGACTTAGG GCTGACGGAG ACGCTTCATG CCCCGGCAGG AACAACCCGT 
ACCGAGTTAC TAACGCTGAA TGAAGTGTGC GTACTGCCCT GCGACCATCC GCTTGCCGCC 
AAAACGGTAC TGACGCCAGA CGATTTTCAG GGGGAAAACT TTATCAGCCT CTCCCGCCTG 
GACAGCTATC GACAGTTGTT GGATACGTTA TTTGCCGAAC ATCAGGTGAA GCGCAGAATG 
GTGGTGGAAA CGCATAGCGC GGCCTCCGTC TGCGCGATGG TGCGCGCCGG GGCGGGCGTT 
TCGATCGTTA ACCCGCTGAC CGCGCTGGAC TATGCCGCCA GCGGCGTCAC CGTTCGCCGC 
TTCAGCATTG ACGTGCCCTT TACCGTCAGC CTGATTCGCC CGCTACACCG CCCCGCCTCC 
GCGCTGGTTG ACGCCTTCAG TAAGCATTTA CAAACGCATC TTTCGCGCCT GGTCGAACCG 
CTGGAGGTTA TTCTGGGGCC GATGACGAAA GCATAA
 
Protein sequence
MAAVNLRHIE IFHAVMTAGN LTEAARLLHT SQPTVSRELA RFEKVLGLTL FERTRGRLHP 
TVQGLRLFEE VQRSWYGLDR IVSAAESLRE FRQGELSIAC LPVFSQSFLP PLLPPFLARY 
PDVSLNIVPQ ESPLLEEWLS AQRHDLGLTE TLHAPAGTTR TELLTLNEVC VLPCDHPLAA 
KTVLTPDDFQ GENFISLSRL DSYRQLLDTL FAEHQVKRRM VVETHSAASV CAMVRAGAGV 
SIVNPLTALD YAASGVTVRR FSIDVPFTVS LIRPLHRPAS ALVDAFSKHL QTHLSRLVEP 
LEVILGPMTK A