| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3345 |
|---|
| Symbol | lysA |
|---|
| ID | 6873308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 3220442 |
|---|
| End bp | 3221704 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642786349 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_002216988 |
|---|
| Protein GI | 198243318 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.0295344 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTGC CGCATTATCA CGCTGAAACT GACCTTAACG CTGAAAATTT GCTCAGATTG
CCTGCTGAAT TCGGCTGTCC GGTCTGGGTC TATGACGCGC ACATTATTCG CCGTCAGATA
GCCGCCCTGC AGCAGTTTGA CGTCGTGCGT TTTGCGCAAA AAGCCTGTTC GAACATTCAT
ATCCTGCGCT TAATGCGCGC GCAGGGTGTC AAGGTGGATT CTGTTTCATT GGGGGAGATC
GAACGTGCGC TGGCGGCGGG CTACGATCCG CAAACGTGCC CTGATGATAT CGTTTTTACC
GCCGATGTGA TTGACGCCGC CACGCTGGCG CGCGTCAGCG AACTGCATAT TCCGGTCAAT
GCCGGCTCGG TAGATATGCT GACGCAGCTT GGTCAGGTTT CGCCTGGGCA TCGCGTCTGG
TTGCGCGTGA ATCCTGGTTT TGGTCACGGC CACAGCCAGA AAACCAACAC CGGGGGCGAA
AACAGCAAAC ACGGCATCTG GCATAGCGAT CTTCCGGCGG CGCTGGCGAT AATGCAGAAA
TACCGACTGA AACTTGTCGG TATCCATATG CACATTGGTT CCGGCGTCGA TTATGGCCAT
CTGGAGCAGG TTTGCGGCGC GATGGTACGC CAGGTGCTGG AATGTGGTCA GGATGTGGAG
GCGATTTCGG CAGGCGGCGG ACTCTCGATA CCTTATCGTG AGGGAGAAGA GCCCGTTGAT
ACGCGCCATT ACTATGGTCT GTGGAACGCG GCGCGCGAGC AAATCGCCCG CCATCTGGGA
CATGCGGTCA AACTTGAGAT CGAACCCGGA CGTTTTCTGG TGGCGCAATC GGGCGTGCTG
GTAACGCAGG TACGTAGCGT AAAACAGATG GGAAGCCGCC ATTTCGTGCT GGTAGATGCG
GGTTTTAACG ATCTGATGCG CCCGGCGATG TACGGTAGCT ATCACCGTAT TTCGGCGCTG
GCGGCGGATG GTCGCGCGCT TGAAAATGGC CCGTGGGTCG AGACGGTGGT TGCCGGGCCG
CTATGCGAAT CAGGCGATGT TTTTACGCAG CAGGAAGGGG GAATGGTTGA AACACGCGCC
TTACCTGCGG TCATCCCCGG CGATTACCTC GTATTGCACG ATACCGGCGC GTACGGCGCG
TCTATGTCAT CGAATTACAA CAGCCGCCCG CTCCTGCCGG AAGTACTGTT TGACAATGGA
CAGGCGCGGC TGATCCGCCG TCGTCAGACC ATTGAAGAGC TGTTAGCGCT GGAGATGCTC
TGA
|
|---|
| Protein sequence | MSLPHYHAET DLNAENLLRL PAEFGCPVWV YDAHIIRRQI AALQQFDVVR FAQKACSNIH
ILRLMRAQGV KVDSVSLGEI ERALAAGYDP QTCPDDIVFT ADVIDAATLA RVSELHIPVN
AGSVDMLTQL GQVSPGHRVW LRVNPGFGHG HSQKTNTGGE NSKHGIWHSD LPAALAIMQK
YRLKLVGIHM HIGSGVDYGH LEQVCGAMVR QVLECGQDVE AISAGGGLSI PYREGEEPVD
TRHYYGLWNA AREQIARHLG HAVKLEIEPG RFLVAQSGVL VTQVRSVKQM GSRHFVLVDA
GFNDLMRPAM YGSYHRISAL AADGRALENG PWVETVVAGP LCESGDVFTQ QEGGMVETRA
LPAVIPGDYL VLHDTGAYGA SMSSNYNSRP LLPEVLFDNG QARLIRRRQT IEELLALEML
|
|---|
| |