Gene SeD_A3307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3307 
SymbolgcvA 
ID6875704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3182019 
End bp3182936 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content51% 
IMG OID642786317 
ProductDNA-binding transcriptional activator GcvA 
Protein accessionYP_002216958 
Protein GI198245105 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00899018 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAAC GATTACCTCC TTTAAATGCG TTACGCGTTT TTGATGCTGC CGCGCGCCAT 
TTGAGCTTTA CGCGAGCAGC GGAAGAACTT TTTGTGACGC AGGCCGCAGT AAGCCACCAA 
ATTAAGTCAC TTGAGGATTT TTTGGGGCTA AAACTGTTCC GCCGCCGCAA TCGTTCGCTG 
CTGCTGACGG AAGAAGGCCA AAGCTATTTT CTCGACATTA AAGAGATATT TTCCCAGCTC 
ACGGAAGCAA CGCGTAAGCT CCAGGCGCGC AGTGCCAAAG GGGCGCTGAC GGTGAGTTTA 
CCGCCCAGTT TTGCCATCCA ATGGCTGGTG CCCAGGCTCT CCAGCTTTAA CTCAGCTTAT 
CCGGGAATTG ACGTTCGGAT ACAAGCCGTT GACCGTCAGG AAGATAAACT GGCAGACGAT 
GTCGATGTCG CGATTTTTTA TGGCCGGGGA AACTGGCCGG GCTTGCGCGT CGAAAAATTA 
TACGCAGAAT ATTTACTGCC CGTCTGTTCT CCTTTATTAC TCACAGGCGA AAAACCGTTA 
AAAACGCCGG AAGATCTGGC GAAACACACG TTATTGCACG ATGCCTCCCG GCGTGACTGG 
CAGGCCTATA CTCGTCAGTT AGGGCTCAAC CATATTAACG TTCAGCAAGG GCCGATATTT 
AGCCACAGCG CGATGGTGCT ACAGGCCGCT ATTCACGGAC AGGGGATCGC GCTGGCGAAT 
AATGTTATGG CGCAGTCGGA AATTGAAGCC GGGCGACTGG TGTGTCCATT TAACGATGTT 
CTGGTGAGTA AGAATGCTTT TTATCTGGTT TGTCATGACA GCCAGGCAGA ACTGGGTAAA 
ATAGCCGCCT TCCGTCAGTG GATTTTGGCG AAGGCGGCGA CGGAGCAAGA AAAATTCCGT 
TTTCGTTACG AACAATAA
 
Protein sequence
MSKRLPPLNA LRVFDAAARH LSFTRAAEEL FVTQAAVSHQ IKSLEDFLGL KLFRRRNRSL 
LLTEEGQSYF LDIKEIFSQL TEATRKLQAR SAKGALTVSL PPSFAIQWLV PRLSSFNSAY 
PGIDVRIQAV DRQEDKLADD VDVAIFYGRG NWPGLRVEKL YAEYLLPVCS PLLLTGEKPL 
KTPEDLAKHT LLHDASRRDW QAYTRQLGLN HINVQQGPIF SHSAMVLQAA IHGQGIALAN 
NVMAQSEIEA GRLVCPFNDV LVSKNAFYLV CHDSQAELGK IAAFRQWILA KAATEQEKFR 
FRYEQ