Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3277 |
Symbol | rumA |
ID | 6873556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3152916 |
End bp | 3154211 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642786290 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_002216931 |
Protein GI | 198244789 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0400124 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.0635589 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCAAT TCTACTCTGC AAAACGGCGC GTGACGACGC GTCAGATCAT AACCGTTAAA GTCAATGACC TCGATTCATT TGGTCAGGGC GTAGCCCGTC ATAACGGAAA AGCGCTGTTT ATCCCCGGTT TATTGCCTGA GGAAAGCGCA GAAGTCATTA TTACAGAAGA TAAAAAGCAA TTTGCCCGCG CACGCGTTTC GCGCCGTTTG AATGATAGCC CGGAACGAGA AACGCCGCGC TGCCCGCATT TTGGCGTCTG CGGCGGTTGT CAGCAACAGC ATGTCAGCAT CGCCCTGCAA CAACGCAGCA AAAGCGCGGC GCTGGCGCGT TTGATGAAAC ACGAGGTGAA TGACATCATC GCCGGCGCGC CCTGGGGTTA TCGGCGTCGT GCGCGGTTAA GTCTGAATTG CCCGCCGGAT AAACCGCTGC AAATGGGATT TCGCAAAGCG GGTTCCAGCG ATATCGTCAA TGTCGAACAG TGCCCTGTTT TGGCGCCCCA GCTTGCAGCA TTGCTGCCCC GAATCAGGGC GTGTCTGGCG AGTTTACACG GCACCCGACA TCTTGGGCAT GTTGAGCTGG TACAGGCGGG AAGCGGTACG CTGATGATTC TGCGCCATAC CGCGCCATTA AGTGCGGCGG ATAAAGAAAA ACTGGAACGC TTTTCGCATT CTGAGGGATT GTCTCTGTTT CTGGCGCCGT TTAGCGAGAT ACTGGAAACG GTATCTGGCG AAGCGCCCTG GTATGATTCG CATGGCTTAC GTTTAGCCTT CAGTCCGCGA GACTTTATTC AGGTTAATGA GGCGGTAAAC CAGCAAATGG TCGCCCGCGC GCTGGAGTGG CTTGATGTGC GCGCCGAGGA TCGTGTCCTG GATCTGTTCT GCGGAATGGG GAATTTTACG CTGCCGCTGG CAACGCGCGC GGCAAGCGTG ATTGGGGTTG AGGGCGTTCC GGCGCTGGTA GAAAAAGGCC GTGAAAACGC CATCCGCAAT GGTTTACATA ATGTGACATT CTTCCATGAG AACCTGGAGG AAGAGGTCAC GAAGCAGCCG TGGGCGAAAA ACGGCTTTGA CAAAGTCTTA CTCGATCCTG CGCGTGCGGG GGCTACAGGA GTGATGCGAC ATATTATAAA ATTAAAACCT ATTCGCATTG TTTATGTATC CTGTAACCCG GCGACGCTGG CGCGCGATAG TGAAGCGCTG GTCAATGCGG GATATGAGGT TACGCGTTTA GCGATGCTCG ACATGTTCCC GCACACAGGA CATCTGGAAT CAATGGTTCT GTTCGAGCGC ATGTAA
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Protein sequence | MAQFYSAKRR VTTRQIITVK VNDLDSFGQG VARHNGKALF IPGLLPEESA EVIITEDKKQ FARARVSRRL NDSPERETPR CPHFGVCGGC QQQHVSIALQ QRSKSAALAR LMKHEVNDII AGAPWGYRRR ARLSLNCPPD KPLQMGFRKA GSSDIVNVEQ CPVLAPQLAA LLPRIRACLA SLHGTRHLGH VELVQAGSGT LMILRHTAPL SAADKEKLER FSHSEGLSLF LAPFSEILET VSGEAPWYDS HGLRLAFSPR DFIQVNEAVN QQMVARALEW LDVRAEDRVL DLFCGMGNFT LPLATRAASV IGVEGVPALV EKGRENAIRN GLHNVTFFHE NLEEEVTKQP WAKNGFDKVL LDPARAGATG VMRHIIKLKP IRIVYVSCNP ATLARDSEAL VNAGYEVTRL AMLDMFPHTG HLESMVLFER M
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