Gene SeD_A3234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3234 
SymbolnlpD 
ID6872507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3111039 
End bp3112172 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content52% 
IMG OID642786250 
Productlipoprotein NlpD 
Protein accessionYP_002216891 
Protein GI198243830 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones85 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCGG GAAGCCCAAA ATTCACCGTT AGTCGCATTG CGGCACTATC ACTGGTTTCA 
CTATGGCTGG CAGGTTGTAC CAGTTCGTCA AACCCTCCGG CGCCGGTCAC GTCTGTGGAC
AGTGGGTCGT CATCAAATAC CAATTCCGGG ATGTTGATCA CACCGCCGCC AAAAATGGGC
GCGACGACGC AACAAACGCC GCAACAAGCG CCGCAAATTC AACCCGTTCA GCGTCCTGTA
ACGCAGCCCA TGCAAACTCA ACCGGTCACG GAACAACCCG TGCAGATGGA AAATGGGCGA
ATTGTATACA ATCGCCAGTA TGGGAATATT CCGAAAGGTA GCTATACGGG TGGCAGTACT
TACACCGTGA AAAAGGGTGA TACGCTTTTT TACATCGCCT GGATTACCGG GAACGATTTC
CGCGATCTGG CCCAGAGAAA CAGTATTTCT GCCCCGTATA GCCTGAATGT AGGGCAAACT
TTGCAAGTTG GTAACGCATC CGGTATGCCA ATTACTGGCG GAAATGCGAT CACCCAGGCG
GATGCAGCAC AGCAAGGAGT TGTGACCAGG TCTGCACAAA ATTCCACCGT TGCAGTTGCG
TCTCAACCAA CAATTACGTA TTCTGAGGGC TCAGGTGAAC AAAGTGCTAA CAAAATGTTG
CCAAACAACA AGCCTGCTGG GACGGTTGTC ACAGCGCCTG TAACGGCACC AACGGTAAGC
ACGACCGAAC CAAATGCAAG CAGTACGTCA ACCAGCGCGC CGATTTCCGC ATGGCGCTGG
CCGACGGATG GCAAAGTGAT CGAAAACTTT GGCGCTTCCG AAGGGGGCAA TAAAGGGATC
GACATTGCAG GCAGTAAGGG ACAGGCTATC GTCGCAACCG CTGATGGGCG CGTCGTATAT
GCCGGTAACG CACTGCGTGG TTACGGTAAT CTTATTATCA TCAAACATAA CGATGATTAC
CTGAGTGCCT ACGCCCATAA TGATACGATG CTGGTCCGGG AACAACAGGA AGTTAAGGCG
GGGCAAAAAA TCGCTACTAT GGGTAGCACC GGCACCAGCT CTACACGCTT GCATTTTGAA
ATTCGTTACA AGGGGAAATC CGTAAACCCG CTGCGTTATT TACCGCAGCG ATAA
 
Protein sequence
MSAGSPKFTV SRIAALSLVS LWLAGCTSSS NPPAPVTSVD SGSSSNTNSG MLITPPPKMG 
ATTQQTPQQA PQIQPVQRPV TQPMQTQPVT EQPVQMENGR IVYNRQYGNI PKGSYTGGST
YTVKKGDTLF YIAWITGNDF RDLAQRNSIS APYSLNVGQT LQVGNASGMP ITGGNAITQA
DAAQQGVVTR SAQNSTVAVA SQPTITYSEG SGEQSANKML PNNKPAGTVV TAPVTAPTVS
TTEPNASSTS TSAPISAWRW PTDGKVIENF GASEGGNKGI DIAGSKGQAI VATADGRVVY
AGNALRGYGN LIIIKHNDDY LSAYAHNDTM LVREQQEVKA GQKIATMGST GTSSTRLHFE
IRYKGKSVNP LRYLPQR