Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3233 |
Symbol | rpoS |
ID | 6872205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3109984 |
End bp | 3110976 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642786249 |
Product | RNA polymerase sigma factor RpoS |
Protein accession | YP_002216890 |
Protein GI | 198243199 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.718161 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAGA ATACGCTGAA AGTTCATGAT TTAAATGAAG ACGCGGAATT TGATGAGAAC GGAGTAGAGG CTTTTGACGA AAAAGCCTTG AGTGAAGAGG AACCCAGTGA TAACGACCTG GCTGAAGAAG AGCTGTTATC GCAAGGGGCC ACACAGCGTG TGTTGGACGC GACTCAGCTT TACCTTGGTG AGATTGGGTA TTCACCACTG TTAACAGCCG AAGAAGAAGT CTATTTTGCG CGTCGCGCAC TGCGTGGAGA TGTCGCTTCT CGCCGTCGCA TGATTGAGAG TAACCTGCGT CTGGTGGTAA AAATTGCCCG CCGTTATGGC AATCGTGGAC TGGCGTTGCT GGACCTGATT GAAGAGGGCA ATCTGGGGCT TATCCGTGCA GTCGAGAAGT TTGACCCGGA ACGCGGGTTC CGCTTCTCAA CATACGCAAC CTGGTGGATT CGCCAGACAA TCGAACGGGC GATTATGAAC CAAACCCGTA CGATTCGCTT GCCGATTCAC ATTGTTAAAG AGCTGAACGT ATACCTGCGC ACCGCACGTG AGTTGTCGCA TAAACTGGAC CACGAACCGA GTGCGGAAGA AATTGCAGAG CAACTGGATA AACCGGTTGA TGACGTCAGC CGTATGCTTC GTCTCAACGA GCGCATTACC TCGGTAGACA CCCCGCTGGG CGGTGATTCC GAAAAAGCGT TGCTGGACAT CCTGGCCGAT GAAAAAGAGA ACGGTCCGGA AGACACCACG CAAGATGACG ATATGAAACA GAGCATCGTC AAATGGTTGT TCGAACTGAA CGCCAAACAG CGTGAAGTGC TGGCGCGCCG TTTCGGTCTG CTGGGATATG AAGCTGCGAC ACTGGAAGAT GTAGGCCGTG AAATCGGTCT TACGCGTGAG CGTGTTCGTC AGATTCAGGT TGAAGGCCTG CGCCGTCTGC GCGAAATTCT GCAGACGCAG GGGCTGAATA TCGAAGCGCT GTTCCGCGAG TAA
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Protein sequence | MSQNTLKVHD LNEDAEFDEN GVEAFDEKAL SEEEPSDNDL AEEELLSQGA TQRVLDATQL YLGEIGYSPL LTAEEEVYFA RRALRGDVAS RRRMIESNLR LVVKIARRYG NRGLALLDLI EEGNLGLIRA VEKFDPERGF RFSTYATWWI RQTIERAIMN QTRTIRLPIH IVKELNVYLR TARELSHKLD HEPSAEEIAE QLDKPVDDVS RMLRLNERIT SVDTPLGGDS EKALLDILAD EKENGPEDTT QDDDMKQSIV KWLFELNAKQ REVLARRFGL LGYEAATLED VGREIGLTRE RVRQIQVEGL RRLREILQTQ GLNIEALFRE
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