Gene SeD_A3186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3186 
Symbol 
ID6874825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3064247 
End bp3065914 
Gene Length1668 bp 
Protein Length555 aa 
Translation table11 
GC content43% 
IMG OID642786206 
Productinvasion protein regulator 
Protein accessionYP_002216847 
Protein GI198245842 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.735415 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACATT TTAATCCTGT TCCTGTTCCT GTATCGAATA AAAAATTCGT CTTTGATGAT 
TTCATACTCA ACATGGACGG CTCCCTGCTA CGCTCAGAAA AGAAAGTCAA TATTCCGCCA 
AAAGAATATG CCGTTCTGGT CATCCTGCTC GAAGCCGCCG GCGAGATTGT GAGTAAAAAC 
ACCTTACTGG ACCAGGTATG GGGCGACGCG GAAGTTAACG AAGAATCTCT TACCCGCTGT 
ATTTATGCCT TACGACGTAT TCTGTCGGAA GATAAAGAGC ATCGTTACAT TGAAACACTG 
TACGGACAGG GCTATCGGTT TAATCGTCCG GTCGTAGTGG TGTCTCCGCC AGCGCCGCAA 
CCTACGACTC ATACATTGGC GATACTTCCT TTTCAGATGC AGGATCAGGT TCAATCCGAG 
AGTCTGCATT ACTCTATCGT GAAGGGATTA TCGCAGTATG CGCCCTTTGG CCTGAGCGTG 
CTGCCGGTGA CCATTACGAA GAACTGCCGC AGTGTTAAGG ATATTCTTGA GCTCATGGAT 
CAATTACGCC CCGATTATTA TATCTCCGGG CAGATGATAC CCGATGGTAA TGATAATATT 
GTACAGATTG AGATAGTTCG GGTTAAAGGT TATCACCTGC TGCACCAGGA AAGCATTAAG 
TTGATAGAAC ACCAACCCGC TTCTCTCTTG CAAAACAAAA TTGCGAATCT TTTGCTCAGA 
TGTATTCCCG GACTTCGCTG GGACACAAAG CAGATTAGCG AGCTAAATTC GATTGACAGT 
ACTATGGTTT ACTTACGCGG TAAGCATGAG TTAAATCAAT ACACCCCCTA TAGCTTACAG 
CAAGCGCTTA AATTGCTGAC TCAATGCGTT AACATGTCGC CAAACAGCAT TGCGCCTTAC 
TGTGCGCTGG CAGAATGCTA CCTCAGCATG GCGCAAATGG GGATTTTTGA TAAACAAAAC 
GCTATGATCA AAGCTAAAGA ACATGCGATT AAGGCGACAG AGCTGGACCA CAATAATCCA 
CAAGCTTTAG GATTACTGGG GCTAATTAAT ACGATTCACT CAGAATACAT CGTCGGGAGT 
TTGCTATTCA AACAAGCTAA CTTACTTTCG CCCATTTCTG CAGATATTAA ATATTATTAT 
GGCTGGAATC TTTTCATGGC TGGTCAGTTG GAGGAGGCCT TACAAACGAT TAACGAGTGT 
TTAAAATTGG ACCCAACGCG CGCAGCCGCA GGGATCACTA AGCTGTGGAT TACCTATTAT 
CATACCGGTA TTGATGATGC TATACGTTTA GGCGATGAAT TACGCTCACA ACACCTGCAG 
GATAATCCAA TATTATTAAG TATGCAGGTT ATGTTTCTTT CGCTTAAAGG TAAACATGAA 
CTGGCACGAA AATTAACTAA AGAAATATCC ACGCAGGAAA TAACAGGACT TATTGCTGTT 
AATCTTCTTT ACGCTGAATA TTGTCAGAAT AGTGAGCGTG CCTTACCGAC GATAAGAGAA 
TTTCTGGAAA GTGAACAGCG TATAGATAAT AATCCGGGAT TATTACCGTT AGTGCTGGTT 
GCCCACGGCG AAGCTATTGC CGAGAAAATG TGGAATAAAT TTAAAAACGA AGACAATATT 
TGGTTCAAAA GATGGAAACA GGATCCCCGC TTGATTAAAT TACGGTAA
 
Protein sequence
MPHFNPVPVP VSNKKFVFDD FILNMDGSLL RSEKKVNIPP KEYAVLVILL EAAGEIVSKN 
TLLDQVWGDA EVNEESLTRC IYALRRILSE DKEHRYIETL YGQGYRFNRP VVVVSPPAPQ 
PTTHTLAILP FQMQDQVQSE SLHYSIVKGL SQYAPFGLSV LPVTITKNCR SVKDILELMD 
QLRPDYYISG QMIPDGNDNI VQIEIVRVKG YHLLHQESIK LIEHQPASLL QNKIANLLLR 
CIPGLRWDTK QISELNSIDS TMVYLRGKHE LNQYTPYSLQ QALKLLTQCV NMSPNSIAPY 
CALAECYLSM AQMGIFDKQN AMIKAKEHAI KATELDHNNP QALGLLGLIN TIHSEYIVGS 
LLFKQANLLS PISADIKYYY GWNLFMAGQL EEALQTINEC LKLDPTRAAA GITKLWITYY 
HTGIDDAIRL GDELRSQHLQ DNPILLSMQV MFLSLKGKHE LARKLTKEIS TQEITGLIAV 
NLLYAEYCQN SERALPTIRE FLESEQRIDN NPGLLPLVLV AHGEAIAEKM WNKFKNEDNI 
WFKRWKQDPR LIKLR