Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3181 |
Symbol | |
ID | 6872267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3059387 |
End bp | 3060145 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642786201 |
Product | type III secretion apparatus lipoprotein, YscJ/HrcJ family |
Protein accession | YP_002216842 |
Protein GI | 198244869 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.521172 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATTCGTC GATATCTATA TACTTTTCTG CTGGTAATGA CCCTTGCCGG CTGTAAGGAT AAGGATCTTT TAAAAGGACT GGACCAGGAA CAGGCTAATG AGGTCATTGC CGTTCTGCAA ATGCACAATA TAGAGGCGAA TAAAATTGAT AGCGGAAAAT TGGGCTATAG CATTACCGTT GCTGAGCCTG ATTTTACCGC TGCGGTGTAC TGGATTAAAA CTTATCAGCT TCCTCCCCGG CCACGGGTGG AAATAGCGCA GATGTTCCCG GCGGATTCGC TGGTATCGTC TCCGCGAGCT GAAAAGGCCA GGTTATATTC GGCTATTGAA CAGCGACTGG AACAGTCATT ACAGACGATG GAGGGCGTGC TCTCCGCCAG GGTCCATATT AGTTATGATA TTGATGCTGG TGAAAATGGC CGCCCGCCAA AACCTGTTCA TCTGTCGGCA TTAGCCGTAT ATGAACGAGG TTCGCCGCTT GCGCATCAGA TCAGCGATAT CAAGCGTTTC TTAAAGAATA GTTTTGCCGA TGTGGATTAT GACAACATTT CTGTTGTGTT GTCAGAACGT TCTGATGCCC AATTACAGGC TCCCGGCACA CCAGTAAAAC GTAATTCTTT TGCAACCAGT TGGATTGTGT TGATTATTTT GTTATCCGTG ATGTCAGCAG GCTTTGGCGT CTGGTATTAC AAAAACCATT ATGCCCGCAA TAAGAAAGGC ATAACGGCTG ATGATAAGGC GAAATCGTCA AATGAATAG
|
Protein sequence | MIRRYLYTFL LVMTLAGCKD KDLLKGLDQE QANEVIAVLQ MHNIEANKID SGKLGYSITV AEPDFTAAVY WIKTYQLPPR PRVEIAQMFP ADSLVSSPRA EKARLYSAIE QRLEQSLQTM EGVLSARVHI SYDIDAGENG RPPKPVHLSA LAVYERGSPL AHQISDIKRF LKNSFADVDY DNISVVLSER SDAQLQAPGT PVKRNSFATS WIVLIILLSV MSAGFGVWYY KNHYARNKKG ITADDKAKSS NE
|
| |