| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3169 |
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| Symbol | |
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| ID | 6871881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 3048110 |
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| End bp | 3050173 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642786190 |
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| Product | formate hydrogenlyase transcriptional activator |
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| Protein accession | YP_002216831 |
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| Protein GI | 198243416 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.781229 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATC TTGGACAGCA AGGCCTGTTC GATATCACTC GTACCTTATT GCAGCAGCCC
GATTTGGCGT CGCTCAGTGA AGCGCTTTCG CAACTGGTAA AGCGTTCAGC GCTCGCCGAC
AGCGCCGGCA TTGTGCTATG GCAGGCGCTG TCGCAACGCG CACAATATTA TGCGACGCGA
GAAAATGGCC GTCCTGTTGA ATATGAAGAT GAAACCGTAC TGGCGCACGG CCCGGTACGT
CGCATCCTTT CTCGCCCCGA TGCATTGCAC TGTAATTTCC ATGAGTTTAC CGAAACCTGG
CCGCAGCTTG CCGCGAGCGG CCTCTACCCG GAATTTGGTC ATTACTGTCT GCTTCCTTTA
GCCGCGGAGG GCCGTATTTT CGGCGGCTGC GAATTCATCC GTCAGGAAGA TCGCCCCTGG
AGTGAAAAGG AATATGACCG TCTGCATACG TTTACCCAAA TTGTCGGCGT GGTCGCCGAG
CAAATTCAAA ACCGGGTAAA CAATAATGTC GATTATGATC TGTTGTGCCG CGAACGCGAT
AACTTCCGTA TTCTGGTTGC GATCACCAAC GCCGTCCTGT CGCGTCTGGA TATTGATGAG
CTGGTAAGCG AAGTCGCAAA AGAGATCCAC CACTATTTCA ATATCGACGC AATCAGCATC
GTGTTGCGCA GCCATCGCAA AAATAAGCTG AATATCTACT CCACCCACTA CCTTGATGAG
CATCATCCGG CGCACGAACA GAGCGAAGTC GACGAAGCCG GCACGCTCAC GGAGCGCGTC
TTTAAAAGTA AAGAGATGCT GCTTATCAAC CTCAACGAAC GCGATCCGCT TGCTCCCTAC
GAACGCATGC TGTTCGATAC CTGGGGCAAT CAGATCCAGA CGCTTTGCCT GCTGCCGTTG
ATGTCCGGCA AGACGATGCT TGGCGTGCTC AAACTGGCCC AGTGCGAAGA AAAAGTGTTT
ACCACCGCCA ACCTCAAGCT GCTGCGTCAG ATTGCCGAAC GAGTAGCCAT TGCCGTGGAT
AATGCGCTGG CCTATCAGGA AATCCACCGA CTGAAGGAAC GCCTGGTCGA CGAAAACCTG
GCGCTCACGG AGCAGCTTAA TAACGTCGAC AGCGAGTTTG GCGAGATCAT CGGACGCAGC
GAAGCGATGT ACAACGTGCT AAAGCAGGTT GAGATGGTGG CGCAGAGCGA CAGTACCGTG
CTAATTCTGG GCGAAACGGG AACCGGTAAA GAGTTGATTG CCCGCGCCAT TCACAACCTG
AGCGGACGTA GCGGGCGCAG GATGGTAAAG ATGAACTGCG CTGCGATGCC GGCGGGGCTG
CTGGAAAGCG ATCTGTTTGG TCATGAGCGC GGCGCGTTTA CCGGCGCCAG CGCGCAGCGA
ATTGGCCGTT TCGAGCTGGC GGATAAAAGC TCGCTGTTTC TGGATGAAGT GGGCGACATG
CCGCTGGAGC TACAGCCTAA GCTGCTGCGT GTCCTTCAGG AGCAAGAGTT TGAACGTCTC
GGCAGCAATA AACTGATCCA GACCGACGTG CGGCTGATCG CCGCGACTAA CCGCGATCTG
AAAAAAATGG TCGCCGATCG CGAATTCCGT AACGATCTCT ACTATCGGCT GAATGTATTT
CCGATCCAGC TTCCTCCGTT ACGCGAACGT CCGGAAGATA TACCACTACT GGTCAAAGCG
TTCACCTTCA AAATCGCCCG CCGAATGGGG CGTAATATCG ACAGCATTCC CGCCGAAACG
CTGCGCACGC TCAGCAGCAT GGAATGGCCG GGGAACGTTC GCGAACTGGA GAATGTCGTC
GAGCGCGCCG TGCTGCTGAC GCGCGGCAAT GTGCTACAAC TGTCGCTGCC GGATATTACC
GCCGTAACAC CCGATACCTC GCCTGTTGCG ACTGAAAGCG TCAAAGAAGG CGAAGATGAA
TATCAGCTTA TTATACGCGT GCTGAAAGAG ACCAATGGCG TAGTGGCTGG ACCAAAAGGC
GCGGCGCAGC GTCTGGGGCT TAAACGAACC ACCCTGTTGT CGCGTATGAA GCGATTGGGT
ATTGATAAAG ACGCGTTAGC GTAA
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| Protein sequence | MSDLGQQGLF DITRTLLQQP DLASLSEALS QLVKRSALAD SAGIVLWQAL SQRAQYYATR
ENGRPVEYED ETVLAHGPVR RILSRPDALH CNFHEFTETW PQLAASGLYP EFGHYCLLPL
AAEGRIFGGC EFIRQEDRPW SEKEYDRLHT FTQIVGVVAE QIQNRVNNNV DYDLLCRERD
NFRILVAITN AVLSRLDIDE LVSEVAKEIH HYFNIDAISI VLRSHRKNKL NIYSTHYLDE
HHPAHEQSEV DEAGTLTERV FKSKEMLLIN LNERDPLAPY ERMLFDTWGN QIQTLCLLPL
MSGKTMLGVL KLAQCEEKVF TTANLKLLRQ IAERVAIAVD NALAYQEIHR LKERLVDENL
ALTEQLNNVD SEFGEIIGRS EAMYNVLKQV EMVAQSDSTV LILGETGTGK ELIARAIHNL
SGRSGRRMVK MNCAAMPAGL LESDLFGHER GAFTGASAQR IGRFELADKS SLFLDEVGDM
PLELQPKLLR VLQEQEFERL GSNKLIQTDV RLIAATNRDL KKMVADREFR NDLYYRLNVF
PIQLPPLRER PEDIPLLVKA FTFKIARRMG RNIDSIPAET LRTLSSMEWP GNVRELENVV
ERAVLLTRGN VLQLSLPDIT AVTPDTSPVA TESVKEGEDE YQLIIRVLKE TNGVVAGPKG
AAQRLGLKRT TLLSRMKRLG IDKDALA
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