Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3120 |
Symbol | emrA |
ID | 6874827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 3006439 |
End bp | 3007611 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642786144 |
Product | multidrug resistance protein A |
Protein accession | YP_002216790 |
Protein GI | 198245967 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 0.0308659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAA ATGCGGAGAT CCAAACCCCG CAGCAACCGG CTAAGAAGAA AGGCAAACGC AAAACAGCGC TGCTACTTCT TACCTTGCTC TTTGTTATTA TTGCCGTGGC ATATGGAATT TATTGGTTTT TAGTATTGCG TCATATTGAA GAGACAGATG ATGCTTACGT GGCAGGGAAC CAGGTTCAAA TCATGGCGCA GGTGTCAGGC AGCGTGACGA AAGTCTGGGC TGATAACACC GACTTTGTAA AAGAGGGCGA TGTTCTGGTC ACGCTCGATC AGACTGACGC CAAACAAGCG TTTGAAAGAG CCAAAACGGC GCTGGCCTCC AGCGTGCGCC AAACGCACCA GTTGATGATT AACAGTAAGC AGTTGCAGGC GAATATCGAC GTGCAAAAAA CCGCCCTGGC GCAAGCGCAG AGCGACCTTA ACCGTCGTGT GCCGCTGGGT AATGCCAATC TTATTGGCCG GGAAGAGCTG CAACACGCCC GCGATGCCGT CGCCAGCGCG CAGGCACAGC TGGATGTCGC CATTCAACAG TACAATGCCA ACCAGGCAAT GATACTCAAC AGTAATCTGG AAGATCAGCC TGCGGTTCAA CAAGCGGCGA CCGAAGTGCG TAACGCCTGG CTGGCGCTGG AGCGTACTCG CATCGTCAGT CCAATGACCG GTTATGTCTC CCGCCGCGCC GTCCAGCCTG GCGCGCAGAT CAGCCCCACC ACGCCGCTGA TGGCCGTGGT GCCTGCAACC GATCTGTGGG TGGACGCTAA CTTTAAAGAG ACCCAATTAG CGAATATGCG CATTGGGCAG CCAGTGACGA TTATTACTGA CATTTATGGC GACGACGTAA AATACACCGG TAAAGTCGTC GGTCTGGATA TGGGGACAGG CAGCGCCTTC TCCCTGCTGC CAGCGCAAAA TGCGACGGGT AACTGGATTA AAGTGGTTCA ACGTCTGCCG GTACGCGTCG AACTGGACGC CCGCCAGTTA GAACAACATC CGCTGCGCAT TGGTTTATCG ACGCTGGTCA CCGTGGATAC CGCTAATCGC GACGGTCAGG TACTGGCCAG CCAGGTACGA ACGACGCCGG TTGCCGAAAG TAACGCACGC GAAATTAATC TCGCGCCGGT CAATAAACTG ATCGACGACA TCGTACAGGC TAACGCGGGT TAA
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Protein sequence | MSANAEIQTP QQPAKKKGKR KTALLLLTLL FVIIAVAYGI YWFLVLRHIE ETDDAYVAGN QVQIMAQVSG SVTKVWADNT DFVKEGDVLV TLDQTDAKQA FERAKTALAS SVRQTHQLMI NSKQLQANID VQKTALAQAQ SDLNRRVPLG NANLIGREEL QHARDAVASA QAQLDVAIQQ YNANQAMILN SNLEDQPAVQ QAATEVRNAW LALERTRIVS PMTGYVSRRA VQPGAQISPT TPLMAVVPAT DLWVDANFKE TQLANMRIGQ PVTIITDIYG DDVKYTGKVV GLDMGTGSAF SLLPAQNATG NWIKVVQRLP VRVELDARQL EQHPLRIGLS TLVTVDTANR DGQVLASQVR TTPVAESNAR EINLAPVNKL IDDIVQANAG
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