Gene SeD_A3087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3087 
Symbol 
ID6872409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp2980718 
End bp2982232 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content57% 
IMG OID642786115 
Productintegral membrane protein 
Protein accessionYP_002216761 
Protein GI198243598 
COG category[S] Function unknown 
COG ID[COG3333] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACCT GGATATATCT TTCTCAGGGC TTTGCGGTGG CGATGACGCC GGAAAACCTG 
GTTATCGCGT TGATTGGCTG CTTCGTGGGC ACGATCGTCG GTCTGCTGCC GGGCCTGGGA
CCGATCAACG GCGTGGCAAT CTTACTGCCG CTGGCCTTTG CGTTGCATCT GCCTGCGGAG
TCGGCGCTAA TTCTGCTGGC GACGGTGTAC ATTGGCTGTG AGTATGGCGG CAGGATCTCC
TCCATATTGC TCAACGTCCC CGGCGATGCG GCGGCGATCA TGACGGCGCT GGACGGTTAC
CCAATGGCGC AGCAAGGGAA AGGCGGCGTA GCGCTGTCGA TTTCCGCAGT CAGCTCATTT
TTCGGTTCAT TAATCGCTAT CGGCGGCATC ATTCTGTTCG CCCCTTTACT GGCGCAATGG
TCGCTGGCCT TTGGTCCTGC GGAATATTTC GCCTTAATGG TTTTTGCCAT CGCCTGTCTT
GGCAGCATGA TGGCGCAAAA CCCGCTTAAA TCATTTCTGG CAGCGCTGAT CGGTCTTGGC
CTTGCGACCG TCGGCGTGGA CGCCAACACC GGGGTTTATC GCTTTACCTT TGACAGCGTT
CATCTTTCCG ACGGCGTACA GTTTATCGTC GTGGTGATCG GCCTGTTCTC GGTATCAGAA
ATACTTTTAA TGCTGGAACA TACCAGCAGC GGGCAAACAA TGGTCCGCAA AACGGGTCGA
ATGTTGTTCA ACCTGAAAGA AGGCGCGCAG TGTATCGGCA CCACCCTGCG TTCTTCGGTA
ATCGGCTTTT TTGTCGGCGT ATTGCCCGGC GCCGGGGCGA CCATTGCCAG CGCCATTACC
TATATGACCG AGAAAAAACT CAGCGGCAAC AGCGATAGCT TCGGCAAAGG GGATATTCGC
GGCGTCGCGG CGCCGGAGGC GGCAAACAAC GCCTCAGCCT GCGGCTCCTT CATCCCGATG
CTGACGCTGG GCGTTCCCGG TTCCGGTACT ACGGCAGTGA TGATGGGGGC GCTGACGCTG
TACAACATCA CGCCAGGCCC GGCGATGTTC ACCGAACAGC CGGATATCGT CTGGGGACTC
ATCGCTGCGC TGCTGATTGC GAACGTGATG CTGCTGATCA TGAATATCCC GTTGATCGGT
CTGTTCACCC GTATGCTCAC CATTCCGCTG TGGTTCCTGG TACCCGCCAT CGCTGCCGTA
TCGGCGGTAG GGGTGTATGC GGTACACAGC ACCACCTTCG ATCTGGTGCT GATGGTCGCG
CTCGGCGTGT TAGGGTACAT TTTACGTAAA ATGCACTTCC CCATGTCGCC GCTGATCCTG
GGATTCGTAC TGGGGGAAAT GCTGGAGCAG AACCTGCGTC GCGCACTCTC CATCAGTAAC
GGCAATATGG CGATTTTGTG GCAAAGCGGC GTTGCCAAAG CCCTGCTGAT CATGGCGATC
ATGGTCATTG TCGTACCGCC AGTGTTACGT CTGCTCCGTA AACACAGCCG TAAACCGCAG
GTTGACGCCG GTTAA
 
Protein sequence
MDTWIYLSQG FAVAMTPENL VIALIGCFVG TIVGLLPGLG PINGVAILLP LAFALHLPAE 
SALILLATVY IGCEYGGRIS SILLNVPGDA AAIMTALDGY PMAQQGKGGV ALSISAVSSF
FGSLIAIGGI ILFAPLLAQW SLAFGPAEYF ALMVFAIACL GSMMAQNPLK SFLAALIGLG
LATVGVDANT GVYRFTFDSV HLSDGVQFIV VVIGLFSVSE ILLMLEHTSS GQTMVRKTGR
MLFNLKEGAQ CIGTTLRSSV IGFFVGVLPG AGATIASAIT YMTEKKLSGN SDSFGKGDIR
GVAAPEAANN ASACGSFIPM LTLGVPGSGT TAVMMGALTL YNITPGPAMF TEQPDIVWGL
IAALLIANVM LLIMNIPLIG LFTRMLTIPL WFLVPAIAAV SAVGVYAVHS TTFDLVLMVA
LGVLGYILRK MHFPMSPLIL GFVLGEMLEQ NLRRALSISN GNMAILWQSG VAKALLIMAI
MVIVVPPVLR LLRKHSRKPQ VDAG