Gene SeD_A3066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3066 
Symbol 
ID6871814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp2955002 
End bp2956027 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content49% 
IMG OID642786095 
Productphage integrase 
Protein accessionYP_002216741 
Protein GI198243118 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCA GAAAACAGCC TAACGGAAAA TGGTTGTGTG AATGCTACCC GAACGGACGG 
GATGGCAAAC GTGTACGCAA GCAATTTGCG ACTAAAGGCG AGGCCATAGC ATTCGAAAAC 
CACACCATGG ATGAGGTGAA CAAAAAACCG TGGCTGGGGG AGAAGGAAGA TCGGCGGCAT 
TTGTCAGAAG TGATTGATCA GTGGCATTTA CTTTATGGGC AGACGCTGGC AGACCCCAAA 
CGCCTGATGG CAAAACGCAG CATTATTTGT AATGGCTTGG GCGATCCCAT TGCCTCAGAG 
TTAACCGCAG GCGATTTTAC GAAATACAGG GAAGCACGGT TAAAAGGTGA AGTAAAAAAT 
GAAGATGGCG TGCTTATGTC GCCAGTTAAG CCCCGTACGG TAAACCTTGA ACAACGTAAC 
CTATCATCTG TTTTTGGCAC ACTGAAAAAG CTGGGCCACT GGTCAGCACC CAACCCGCTC 
GCTGGGCTAC CAACATTCAA AATCGCAGAG GGCGAACTGG CGTTCCTGGC ACCGGAAGAA 
ATTAAACGTC TACTGGATGC CTGTGCTGAT TCTCAGAGTC CCAGTTTGCT GATGATTGCA 
AAAGTATGCC TGGCAACTGG CGCCCGATGG AGTGAAGCTG AAAACCTGCA GGGCCATCAG 
CTATCAAAAT ACCGCATCAC TTATACCAAG ACGAAGGGCA AGAAAAACCG TACCGTGCCA 
ATATCTCAGG ATCTGTATGA AGAACTCCCC AAAAACAGAG GGAAGCTATT CACGCCATGC 
AGAAAAGCTT TTGAGCGTGC AGTAAAAAGA GCTGGTATTG AGCTACCAGA AGGCCAATGT 
ACCCACGTGC TGCGCCATAC CTTCGCCAGC CACTTTATGA TGAACGGCGG AAACATACTG 
GTACTGCGCG ATATTCTGGG CCACGCAGAT ATAAAAATGA CGATGGTTTA CGCTCACTTT 
GCCCCTGACC ACCTCGAAGA CGCAGTGACA AAAAACCCGC TTCACAACCT CAATTGGAAA 
CGCTAA
 
Protein sequence
MSIRKQPNGK WLCECYPNGR DGKRVRKQFA TKGEAIAFEN HTMDEVNKKP WLGEKEDRRH 
LSEVIDQWHL LYGQTLADPK RLMAKRSIIC NGLGDPIASE LTAGDFTKYR EARLKGEVKN 
EDGVLMSPVK PRTVNLEQRN LSSVFGTLKK LGHWSAPNPL AGLPTFKIAE GELAFLAPEE 
IKRLLDACAD SQSPSLLMIA KVCLATGARW SEAENLQGHQ LSKYRITYTK TKGKKNRTVP 
ISQDLYEELP KNRGKLFTPC RKAFERAVKR AGIELPEGQC THVLRHTFAS HFMMNGGNIL 
VLRDILGHAD IKMTMVYAHF APDHLEDAVT KNPLHNLNWK R