| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3021 |
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| Symbol | |
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| ID | 6874580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 2921316 |
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| End bp | 2922506 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642786054 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_002216700 |
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| Protein GI | 198245008 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.0405011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCA ATCAGCATGA TGCCGCGATG GACGATCCCG ATATTCAGCG TGAACGGGCG
TTTTCCGGCG CGGGTCGTAT TGTTCTGATC TGCTCACTGT TATTTCTCAT TCTCGGCATC
TGGGCGTGGT TTGGCCGACT GGATGAGGTT TCCACCGGCA ACGGGAAAGT GATCCCCAGT
TCACGCGAAC AGGTTCTGCA GTCGCTGGAT GGCGGCATTC TGGCGCAGTT GACGGTGCGG
GAAGGCGACA GAGTTCAGGC TAACCAGATT GTCGCCCGGC TTGATCCGAC GCGTCTGGCG
TCCAATGTGG GTGAAAGTGC GGCAAAATAT CGCGCTTCAC TCGCCTCCAG CGCACGGTTA
ACCGCGGAAG TCAACGACTT ACCTCTCGCC TTCCCCGCTG AGCTGAACGG CTGGCCGGAT
CTGATTGCCG CAGAGACGCG TCTCTATAAA AGCCGCCGCG CGCAGCTGGC CGATACCGAA
GCCGAGCTAC GGGATGCGCT GGCGTCGGTT AATAAAGAGC TGGCCATTAC CCAGCGTCTG
GAGAAAAGCG GCGCGGCCAG TCATGTTGAA GTGCTGCGCC TGCAACGACA AAAAAGCGAT
TTAGGCTTAA AAATTACCGA TCTGCGCTCA CAATATTATG TGCAGGCACG CGAAGCGTTA
TCAAAAGCGA ACGCTGAGGT CGATATGCTC TCCGCCATTT TAAAAGGACG CGAGGATTCC
GTCACCCGCC TTACCATACG TTCGCCGGTA CGCGGCATTG TTAAAAATAT CCAGGTCACG
ACGATTGGCG GCGTGATCCC GCCTAACGGT GAGATGATGG AGATAGTGCC GGTAGACGAT
CGTCTGTTGA TTGAAACCCG CCTTTCGCCG CGTGATATCG CCTTTATTCA TCCCGGCCAA
CGCGCATTGG TTAAAATTAC TGCTTACGAT TACGCCATTT ACGGCGGGCT TGACGGCGTG
GTGGAGACCA TTTCACCGGA TACCATTCAG GATAAAGTGA AACCGGAAAT TTTCTACTAT
CGCGTGTTTA TCCGCACCCA CCAGGACTAT CTACAAAATA AATCAGGACG CCGTTTTTCG
ATTGTTCCAG GCATGATCGC CACGGTGGAT ATCAAAACCG GTGAAAAAAC CATTGTCGAC
TATTTAATCA AACCGTTTAA TCGCGCGAAA GAAGCGCTGC GCGAGCGGTA A
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| Protein sequence | MKINQHDAAM DDPDIQRERA FSGAGRIVLI CSLLFLILGI WAWFGRLDEV STGNGKVIPS
SREQVLQSLD GGILAQLTVR EGDRVQANQI VARLDPTRLA SNVGESAAKY RASLASSARL
TAEVNDLPLA FPAELNGWPD LIAAETRLYK SRRAQLADTE AELRDALASV NKELAITQRL
EKSGAASHVE VLRLQRQKSD LGLKITDLRS QYYVQAREAL SKANAEVDML SAILKGREDS
VTRLTIRSPV RGIVKNIQVT TIGGVIPPNG EMMEIVPVDD RLLIETRLSP RDIAFIHPGQ
RALVKITAYD YAIYGGLDGV VETISPDTIQ DKVKPEIFYY RVFIRTHQDY LQNKSGRRFS
IVPGMIATVD IKTGEKTIVD YLIKPFNRAK EALRER
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