Gene SeD_A2972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2972 
Symbol 
ID6875402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp2863304 
End bp2864203 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content51% 
IMG OID642786009 
ProductLysR substrate binding domain-containing protein 
Protein accessionYP_002216659 
Protein GI198244545 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.627611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTGC GTCGGTTTAT TACGCTGAAA ACGGTAGTGG AAGAGGGCTC GTTTCTGCGG 
GCTTCGCAAA AGCTGTGCTG CACTCAGTCG ACGGTAACTT TTCATATTCA ACAGCTTGAA 
CGTGAGTTTT CCCTGCAACT GTTCGAGAAA ATAGGGCGCC GAATGTGTCT GACCACTGAG 
GGGAAAAAGC TGATGCCGCA TATCCATGAA CTGACGCGTG TGATGGAGTC GATTCGTGAA 
GCCGCAAGAC AGGATGCGGA ACCCGGCGGA GAGCTGCGCG TGGCGACAGG TGAAACCTTA 
CTGGCGTACA AAATGCCGCA GGTTTTACAA CGTTTTAAGC TGCGAGCGCC GAATGTCAGA 
TTGTCGCTAC AGTCGCTGAA TTGCTATGTG ATACGTGATG CGTTGCTGAA TGACGAGGTC 
GATCTGGGCG TTTTTTATCG CGTAGGTAAT GATGACGCGC TCACGATGCA GCAACTGGGG 
GAGCAGTCGC TGGCGCTGGT GGCCTCTCCA CTGCTACAGG ATGCTGATTT TACGCAGCCA 
GATCAGCATA TCCCCTGCAG CTTCATCATC AATGAACCGC AATGTGTCTT CCGCCAGCTA 
TTTGAAAGTA CGCTACGGCA GAGGCGGATT ACGCTGGAAA ACACCATTGA ACTGTGGAGT 
ATTGAAAGTA TTAAACAGTG TGTGGCTGCT AACCTGGGCA TCAGCTTTTT ACCACGTTTT 
ACCGTTGAAC GAGAACTTAG TACCGGTCAG TTGAAAGAGC TGCCGTTTGG CGCGCCGTCG 
CTATCGATCA TGGCGCTGTG CGCCCATCAT GCCGGGAAAG CGGTCAGCCC GGCAATGCAG 
ATATTTATAC AGTGTATGGA GGCGTGTTTT ACCGTGGAAG ATAAAAAAAT GCCGGGTTAA
 
Protein sequence
MDLRRFITLK TVVEEGSFLR ASQKLCCTQS TVTFHIQQLE REFSLQLFEK IGRRMCLTTE 
GKKLMPHIHE LTRVMESIRE AARQDAEPGG ELRVATGETL LAYKMPQVLQ RFKLRAPNVR 
LSLQSLNCYV IRDALLNDEV DLGVFYRVGN DDALTMQQLG EQSLALVASP LLQDADFTQP 
DQHIPCSFII NEPQCVFRQL FESTLRQRRI TLENTIELWS IESIKQCVAA NLGISFLPRF 
TVERELSTGQ LKELPFGAPS LSIMALCAHH AGKAVSPAMQ IFIQCMEACF TVEDKKMPG