Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2901 |
Symbol | pbpC |
ID | 6873539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 2793123 |
End bp | 2795438 |
Gene Length | 2316 bp |
Protein Length | 771 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642785945 |
Product | penicillin-binding protein 1C |
Protein accession | YP_002216595 |
Protein GI | 198243903 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 80 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGGTT GGCGTGGTAA ACGTGGCCGC TGGCTGTGGC TGGCGGGCGC GCCGCTTTTT ATTTTCCTGG CGTTATGGGC AGCGGATAAA CTCTGGCCGC TGCCGCTCAA TGAGGTCCAT CCTGCGCGGG TCGTGGTAGC CCATGACGGT ACGCCGCTGT GGCGCTTTGC CGACGCCGGG GGGATCTGGC GCTATCCGGT GACGATTGAA GAGGTCTCTC CCCGCTACCT GGAGGCCTTA ATCAATTACG AAGATCGCTG GTTCTGGCGG CACCCTGGCG TTAACCCTTT CTCCGTCGCG CGCGCGGCAT GGCAGGATCT TACCGCCGGG CGCGTTATTT CCGGCGGCAG TACGCTGACT ATGCAGGTGG CGAGACTGCT GGACCCGCAT TCGCGCACGT TCGGCGGTAA AATCCGCCAG CTTTGGCGCG CCCTCCAGCT TGAATGGCAT TTGTCCAAGC GCGATATCCT GACGCTGTAC CTGAACCGCG CGCCGTTCGG CGGCACGCTA CAGGGTATTG GCGCTGCAAG CTGGGCCTAC TTCGGCAAGC CGCCCGCGCG CCTGAGCTAC GCTGACGCGG CGCTGCTGGC CGTATTGCCG CAGGCGCCGA GCCGGTTACG CCCCGACCGC TGGCCTGCGA GAGCCGAAGC GGCACGAAAT AAAGTGCTGG ATCGGATGGC GGCGCAGGGC GTCTGGCCTG CCGAAACGGT ACGCGAGTCG CGTGAAGAGC CGGTCTGGCT GGCGCCGCGT CAAATGCCGC AACTGGCGCC GCTTTTTGCC CGAATGATGT TGAGTAAAAG CCGGAGCGAC AAAATTGTGA CCACGCTGGA CGCCGGGTTG CAGCGGCAAC TGGAAGATCT GGCGCGGGCA TGGAAAGGGC GGCTGCCTGC ACGCAGTTCA TTGGCGATGA TCGTCGTCGA TCATACCGAT ATGAGCGTGC GCGGCTGGGT AGGATCGGTA GACCTTAATG ACGACAGCCG TTTTGGTCAT GTCGACATGG TAACGGCGAT CCGATCGCCG GGATCGGTAC TCAAACCCTT TGTGTACGGT CTGGCGCTGG ATGACGGCTT GATCCATCCC GCATCATTAT TACAGGACGT TCCGCGCCGC ACCGGAGATT ACCGCCCGGG AAACTTCGAC AGCGGATTTC ACGGCCCGGT CAGCATGAGC GACGCGCTGG TACGCTCGCT GAATCTGCCT GCCGTTCAGG TGCTTGAAGC CTATGGGCCG AAACGATTTG CGGCAAAACT GCGTAACGTC GGCCTGCCGC TATATTTGCC TGCTGGCGCG GCGCCCAATC TTTCGCTGAT TCTGGGCGGC GCGGGCGCGC GGCTTGACGA GATGGCGGCG GCATACAGCG CGTTCGCTCG TCATGGGAAA GCGGCGAAAC TACGGTTACA GCCGGACGAT CCGCTGTCGG AAAGACCATT AATGTCGCCG GGAGCGGCGT GGATCATTCG GCGGATTATG GCGGATGAAG CGCAACCCTT GCCGGATAAC GCGCTGCCGC GCATTGTGCC GTTGGCGTGG AAAACCGGCA CCAGCTACGG CTATCGCGAT GCGTGGGCTA TTGGCGTTAA CGCGCGCTAT ATCATCGGCA TCTGGACAGG CAGACCCGAC GGCACACCTG TGGTGGGGCA ATTTGGTTTT GCCAGCGCGG TGCCATTGCT TAACCAGGTC AATAATCTGT TACTGGCGCA TACGGGACGC CTGCCGGAAG ATCCGCGTCC GCAGACGGTA AGCCGCGGCG TCATTTGCTG GCCGGGCGGA CAGACTCTGC CTGCCGGAGA CAGCAACTGT CGCCGCCGAC TGGCGACATG GCTGCTCGAT GACAGCCAGC CGCCCACGCT GCTGTTACCT GAGCAGGAAG ACATCAACGG TATTCGTTTC CCGGTCTGGC TGGATGATAC GGGGCGGCGT GTCGCTGCCG ACTGTCCGCA GGCGCGTGCG CATACGTTTA TCGTCTGGCC GCGGCCGCTG GAGCCGTGGC TGCCGCCTAC GGAAAGACGT AGCGCCCGCT TGCCCGCGGC GTCCGACCAC TGTCCGCCGC TACAGGGCAG TGATGCCGCG CCGTTAATGC TGTCAGGAGT GAGGGATGGC GCGGTGATCA GGCAATTGCC AGGCCAGGAA AACGTTACGC TGCCCGTCTC GACTACCGGC GGTAAAGGGC GTCGCTGGTG GTTTTTAAAT GGCGAACCTG TTAATGGCGA AAATAATCGC CTTTCTTTAT TACTCAATAT CGCTGGACGT TATCAACTTG TCGTAATGGA TGAGTCCGGT CAGGTTGCTG CGGTTAATTT TGAATTAATA CGTTAA
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Protein sequence | MNGWRGKRGR WLWLAGAPLF IFLALWAADK LWPLPLNEVH PARVVVAHDG TPLWRFADAG GIWRYPVTIE EVSPRYLEAL INYEDRWFWR HPGVNPFSVA RAAWQDLTAG RVISGGSTLT MQVARLLDPH SRTFGGKIRQ LWRALQLEWH LSKRDILTLY LNRAPFGGTL QGIGAASWAY FGKPPARLSY ADAALLAVLP QAPSRLRPDR WPARAEAARN KVLDRMAAQG VWPAETVRES REEPVWLAPR QMPQLAPLFA RMMLSKSRSD KIVTTLDAGL QRQLEDLARA WKGRLPARSS LAMIVVDHTD MSVRGWVGSV DLNDDSRFGH VDMVTAIRSP GSVLKPFVYG LALDDGLIHP ASLLQDVPRR TGDYRPGNFD SGFHGPVSMS DALVRSLNLP AVQVLEAYGP KRFAAKLRNV GLPLYLPAGA APNLSLILGG AGARLDEMAA AYSAFARHGK AAKLRLQPDD PLSERPLMSP GAAWIIRRIM ADEAQPLPDN ALPRIVPLAW KTGTSYGYRD AWAIGVNARY IIGIWTGRPD GTPVVGQFGF ASAVPLLNQV NNLLLAHTGR LPEDPRPQTV SRGVICWPGG QTLPAGDSNC RRRLATWLLD DSQPPTLLLP EQEDINGIRF PVWLDDTGRR VAADCPQARA HTFIVWPRPL EPWLPPTERR SARLPAASDH CPPLQGSDAA PLMLSGVRDG AVIRQLPGQE NVTLPVSTTG GKGRRWWFLN GEPVNGENNR LSLLLNIAGR YQLVVMDESG QVAAVNFELI R
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