Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2872 |
Symbol | |
ID | 6874033 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 2747521 |
End bp | 2749734 |
Gene Length | 2214 bp |
Protein Length | 737 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642785923 |
Product | cyclic diguanylate phosphodiesterase domain-containing protein |
Protein accession | YP_002216573 |
Protein GI | 198245324 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 79 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTAA ATAAAACTTA TATAAATATC AGAGATAAAT GGTGGGGACT ACCGCTCATC CTTCCTTCGA TTTTACTACC TGTTTTAAGT AGCGCAAATA CTTATGCGCT TACCAGCACT GGAAATGTGG TTCTTTTTTA CCTGCCGTTA GCTTTTATGC TTAGCCTGAT GCTCTTTTTC GGCTGGGCAG CACTGCCGGG CATTGTGCTT GCTATCTTCT GGCGCAGATA CCCGCAGACA GGGCTGTATG AAACCCTTTC TGTGACGATG CACTTTATCA TTACTATCGT GCTAAGCTGG GGCGGCTATC GTGTCTTTTC CCCCCGGCGA AACAATGTTT CCCACGGCGA CGCCCACCTG TTGTTTCAAC GAATATTCTG GCAGGTATTT TGTTCTGCAA CATTATTTCT GGTCATCTAC CAGTTTGCCG CTTTTGTTGG CATGTACGAA AGCAAAGCCA GCCTGATGGG GGTAATGCCC TTTAATATCA ACACGCTGAT TAATTACCAG GCGTTACTGG TCGGTAACCT TGTCGGCGTG CCATTGTGCT ATTTTATTAT TCGTACTCTC CGCAATCCGC TGCACCTGCG GGGGTATTAT CAGCAATTAA AGCTACAGAT TGATAGCAAG GCCACTAAAA AAGAGATCGT TATTTGGCTG GCCGTATTGA CTACACTAAT GTTTATACTG TGTATGCCAT TGACTGATAA TAGTTCAATA TTTAGTACCA ACTATACGCT TTCGTTATTA TTGCCGGTCA TGCTGTGGGG TGCGATGCGC TATGGCTATA AGTTTATTTC AATTATCTGG GCCGTCGTGC TAATTACGTC GATTCATTAT TATCAGCGTT ATATGCCCTG GTATTCAGGT TATGATACGC AATTAGCGAT TACCTCTTCG AGCTATCTGG TTTTTTCTTT TATTGTTAAT TATATGTCTG TACTGGCCAC GCGTCAGCGC GTAGTGAGTG GTCGCGCACG GCGGCTGGCC TATCTTGACC CGGTTGTACA TCTTCTCAAT TTACGTGCGT TAAACCGCGC GCTCCAAAAT GCGCCCTGGT CTACGATCTG TTTTTTACAC GTGCCGGGCC TGGAGCTATT GGGTAAAAAT TATGGCGTCA TGCTACGCAT CCAGTATAAG CAAAAGCTCT CTCACTGGAT TACGCCGATG CTGGCCTCAA ATGAGTGCGT CTACCAGATG TCAGGGCACG ACCTGGTGCT GCGTCTTAAT ACAGAGGCGC ATCAGCAGCG TATTGAAGCG CTGGATAAAC ATATTAAGCA GTTTCGGTTT ATCTGGGATG GACTGCCGCT ACAGCCGCCT GTCGGCGTGA GCTACTGCTG CGTGCGTTCT CCGGTTAGCC ACCTTTATCT TCTGCTGGGC GAATTAAGCA CCAGTTCCGA TCTTTCGTTG ACGACTAACG CGCCGGAGGA TTTACAGCGG CGCGGCGCAA TGCACCTGCA GCGCGATTTG AAGGGCAGAA TTGCGATGAT GAATCGCCTG CAACAGGCGT TGGAGCACGA TCATTTTTTC CTGATGGCGC AGCCTATTTT CGGTGTTCGT GGGGACGTTT ACCATGAAAT TTTACTGCGA CTCAGGGATG ACAACGGCGA CGTTATCAAC CCGGACAATT TTTTACCCGT GGCGCATGAG TTTGGTTTGT CTTCCGCTAT CGATCTCTGG GTGATTGAAA ACACGCTGCG GTTTATGGCG GCCAGCCGGG AATATATGCC CGCGCATCGT TTTGCCATTA ATCTGTCGCC AACATCGGTA TGCCGCGCTC GTTTCCCTGC AGAAGTTAAG CAGTTGCTTA CGCAATATCA GGTTGAACCC TGGCAACTGG TTTTTGAGGT AACGGAAAGC AACTCTCTCA CCAATGCTGA GCAGGCGCAG TTGACGCTGG GACAGCTACA GCAGTTTGGC TGTCAGATAG CGATTGATGA TTTCGGTACT GGCTACGCCA GCTATGCGCG GCTGAAAAAC GTTGACGCCG ATATTCTTAA AATTGATGGC AGTTTTATTC GCAATATAGT GTCAAACAGT CTCGATTATC AGATTGTGGC TTCTATTTGT CATTTAGCGC GAATGAAAAA TATGCAGGTC GTCGCGGAGT ATGTCGAGAG CGAAGAAATA CGAAGCGTCG TGCTCTCGTT GGGGATCGAC TATCTTCAGG GATATTTAAT TGGCGAGCCG CAGCTATTAT CTGAGATTCA GTAA
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Protein sequence | MKLNKTYINI RDKWWGLPLI LPSILLPVLS SANTYALTST GNVVLFYLPL AFMLSLMLFF GWAALPGIVL AIFWRRYPQT GLYETLSVTM HFIITIVLSW GGYRVFSPRR NNVSHGDAHL LFQRIFWQVF CSATLFLVIY QFAAFVGMYE SKASLMGVMP FNINTLINYQ ALLVGNLVGV PLCYFIIRTL RNPLHLRGYY QQLKLQIDSK ATKKEIVIWL AVLTTLMFIL CMPLTDNSSI FSTNYTLSLL LPVMLWGAMR YGYKFISIIW AVVLITSIHY YQRYMPWYSG YDTQLAITSS SYLVFSFIVN YMSVLATRQR VVSGRARRLA YLDPVVHLLN LRALNRALQN APWSTICFLH VPGLELLGKN YGVMLRIQYK QKLSHWITPM LASNECVYQM SGHDLVLRLN TEAHQQRIEA LDKHIKQFRF IWDGLPLQPP VGVSYCCVRS PVSHLYLLLG ELSTSSDLSL TTNAPEDLQR RGAMHLQRDL KGRIAMMNRL QQALEHDHFF LMAQPIFGVR GDVYHEILLR LRDDNGDVIN PDNFLPVAHE FGLSSAIDLW VIENTLRFMA ASREYMPAHR FAINLSPTSV CRARFPAEVK QLLTQYQVEP WQLVFEVTES NSLTNAEQAQ LTLGQLQQFG CQIAIDDFGT GYASYARLKN VDADILKIDG SFIRNIVSNS LDYQIVASIC HLARMKNMQV VAEYVESEEI RSVVLSLGID YLQGYLIGEP QLLSEIQ
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