| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2609 |
|---|
| Symbol | |
|---|
| ID | 6873157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 2485429 |
|---|
| End bp | 2486481 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642785679 |
|---|
| Product | thiamine biosynthesis lipoprotein ApbE |
|---|
| Protein accession | YP_002216336 |
|---|
| Protein GI | 198242105 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 0.425275 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGA CTTTTTGCCG GGCCGTGTGT CTGGCGGCGG CTTTTCTACT TATGGGCTGC
GATGAGGCTC CCGAAACGAC AACAGCGTCA CCTGCCGCTC AGGTGCTGGA AGGTAAAACG
ATGGGGACCC TCTGGCGGGT GAGCGTGGTT GGTATCGATG CGAAACGCGC CGCAGAGTTA
CAGACTAAAA TCCAGACTCA GCTTGATGCT GATGATTGGT TGCTTTCTAC CTATAAAAAT
GACTCCGCGC TGATGCGTTT TAACCATTCA CGCAGCCTTG CGCCCTGGCC GGTCAGCGAA
GCCATGGCGG ATATCGTGAC CTCGGCGCTA CGTATTGGCG CGAAGACGGA CGGCGCGATG
GATATCACCG TGGGCCCGCT GGTCAATCTG TGGGGGTTTG GGCCGGATCG GCAGCCGATG
CATATCCCAA CACCAGCACA AATCGATGCG GCAAAAGCGA AAACAGGCCT GCAACATTTG
CAGGTTATCG ACAGGGCTGG ACATCAGTTT TTGCAAAAAG ATCTGCCGGA TCTTTATGTT
GATCTCTCCA CGGTCGGGGA GGGCTATGCG GCGGATCATC TGGCGCGACT GATGGAGCAG
GAGGGCATTG CGCGTTATCT GGTCTCGGTG GGGGGCGCAT TAAGCAGCCG CGGGATGAAT
GCGCAGGGGC AGCCGTGGCG CGTCGCGATT CAGAAGCCGA CCGACCGGGA AAACGCGGTG
CAGGCGATTG TGGATATCAA CGGGCATGGC ATCAGCACCT CCGGCAGCTA CCGTAACTAT
TATGAGCTGG ATGGCAAGCG TATCTCGCAC GTTATCGATC CGCAAACGGG GCGCCCCATT
GAACACAACC TGGTATCGGT TACGGTCATC GCGCCAACGG CGCTGGAAGC GGACGGCTGG
GACACCGGCC TGATGGTGCT CGGTACGCAA AAGGCGCAAG AGGTCGTGCG GCGGGAAGGG
CTGGCGGTCT TTATGATCAT GAAAGAAGGT GAAGGCTTTA AAACCTGGAT GTCGCCGCAG
TTCAAAACGT TCATGGTGAG CGATAAGAAT TAA
|
|---|
| Protein sequence | MKMTFCRAVC LAAAFLLMGC DEAPETTTAS PAAQVLEGKT MGTLWRVSVV GIDAKRAAEL
QTKIQTQLDA DDWLLSTYKN DSALMRFNHS RSLAPWPVSE AMADIVTSAL RIGAKTDGAM
DITVGPLVNL WGFGPDRQPM HIPTPAQIDA AKAKTGLQHL QVIDRAGHQF LQKDLPDLYV
DLSTVGEGYA ADHLARLMEQ EGIARYLVSV GGALSSRGMN AQGQPWRVAI QKPTDRENAV
QAIVDINGHG ISTSGSYRNY YELDGKRISH VIDPQTGRPI EHNLVSVTVI APTALEADGW
DTGLMVLGTQ KAQEVVRREG LAVFMIMKEG EGFKTWMSPQ FKTFMVSDKN
|
|---|
| |