| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2496 |
|---|
| Symbol | |
|---|
| ID | 6874174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 2374381 |
|---|
| End bp | 2376867 |
|---|
| Gene Length | 2487 bp |
|---|
| Protein Length | 828 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642785576 |
|---|
| Product | fimbrial usher protein |
|---|
| Protein accession | YP_002216234 |
|---|
| Protein GI | 198243594 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.775864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGT TAAACGCCAT CACGCTGTCA CTTTTTGCAG CATTACTTAT TTCACCCGCC
TGGGCTGAAG AAGAAACATT CGATACTAAC TTTATGTTCG GTGGGTTGAA AGGTGAAAAG
GTGTCTCGTT ATCAGATTGA TAGCACCAAA CCCATGGCTG GCGTTTATGA AATGGACGTT
TATGTCAATA AAGAATGGCG TGGAACTTAT GAGGTTAATA TTCAGGATGA CCCCGATAGC
ACCTGTATTT CTCCGGACCT GATCGCCAGC CTGGGAATTA AATTTACCCC GCAGAGTACA
ACAGTAGAAA ATGAATGTAT TGCGCTGAAA ACGGTGGTTC ATGGAGGTAG TGTTTCTTAT
GACACTGCCG CTTTTAACCT TTATCTGAGC GTCCCTCAGG CTTATGTGCT GGAATATGAA
GCGGGCTATG CGTCTCCAGA GACATGGGAC CGTGGAATTA ACGCTTTTTA TACATCGTAT
TATGCCAGCG AATATTACAG CCATTATAAA AGCGGCGGTA GTGAGAAAAA TACTTACGCA
AATTTTGTCA GCGGATTGAA TCTGCTTGGA TGGCAATTAC ATTCTAACGC TAATTTTTCC
AAAAGTGAAA ATTCAGCTGG CAAATGGCAG AGCAATACTC TGTATCTGGA ACGTGATTTC
CCGGCGGTAC TGGGGACAAT GCGTCTGGGG GAACAGTACA CCAGCGGGGA TATGTTTGAT
ACGGTGCGCT TTCGCGGGGT GCGCTTCTGG CGTGATATGC AAATGCTGCC GCACTCTAAG
CAAAATTTCG ATCCGGTTGT GCGTGGCGTG GCGCAAAGTA ACGCCCTGGT GACGGTTGAA
CAGAATGGCT TCATTGTTTA TCAAAAAGAA GTTCCGCCTG GCCCCTTTGT ATTTGAAGAT
CTTCAGCTGG CAGGGGGGGG AGCCGATCTG GACGTGAGCG TTAAAGAGGC TGACGGTACT
GTTTCACGGT TTATTGTTCC GTATTCTTCC GTTCCCAATA TGGTGCAGCC CGGCGTAGCA
AAATATGATT TCGCCGCCGG ACGAAGCAGA ATTGAAGGAG CCTCTCAGCA AACTGATTTT
CTCCAGGGAA CCTATCAGTA CGGGGTCAAT AACCTGCTAA CGTTGTATGG CGGAACGATG
TTAGCCAGCG ATTATCGCTC ATTTACCCTT GGCACCGGAT GGAACACGCT GATTGGCGCG
GTATCTGTCG ACGGTACGTT GTCTCATAGC AAGCAGGATA ATGGCGATGT TTTTGATGGG
GAAAGCTACC AGGTTGCCTG GAATAAATAT CTCCCGCAAT CGGCCACCCA TTTTTCTCTG
GCAGCGTATC GCTACTCATC ACGTGATTAT CGCACTTTTA ACGATCATGT CTGGGCTAAT
AACCGGGATA ACTATCGTCG CGATGATGAC GATATTTATG ATATTGCTGA TTATTATGAG
AATGACTTTG GGCGTAAAAA TACTTTCACT CTCAATATTA ATCAGACGTT ACCCGATGGG
TGGGGATATT TTACTGCCAG CGCTCTGTGG CGCGACTATT GGGGGCGTAG CGGCACGGGA
AAGGATTATC AGTTAAGCTA CAGTAATACC TGGCAGCGGC TCAGTTTTAC GCTATCGGCA
ACTCAGACGT ATGACAGCAA TAACCGTGAA GATAAGCGCT TTAATATCTA TTTATCGATT
CCCTTAACAT GGGGATTAAA GGAGAATGGG GGAAATCGTG ATATCCATTT ATCGAATTCC
ACCACCTTTG ACGATCAAGG TTATGAGGCG AATAACACCA GCCTTAGCGG CACGTTCGGT
AATCGTGATC AGTTTAATTA TACGACTAAC CTCAGCCAGC AGCGACAGGA ACACCAAACG
ACATTCGGGG GATCAGTAAC CTGGAACGCC CCGCTGGCGA CAGTCGGCGG CAGTTACAGC
CAGTCCAATA AATACCATCA GGTGGGCGGA AATATTCAGG GAGGGCTGGT TGCATGGGCC
GATGGCGTGC ATTTAGCCTC TCGCCTTAAT GATACTATCG CGATTATTAA CGCGCCGTAC
CTGGAAGGCG CGGCGGTGCA GGGGCGTCCC TATTTACGTA CCAATGCAAA AGGTTATGCC
GTATTTGAAG CATTGACGCC ATACCGGCAA AATTTTATCT CTCTTGATGT CTCTGAGAGT
GAAAGCGATG TCGCCCTGTT GGGAAATCGA AAAGTTACAG TGCCTTATCG CGGAGCCGTA
GTATTGGTTC ATTTTGAAAC AGAGACCAGT AAACCTTTTT ATTTCCTGGC GCGGCGCGCA
GATGGCGAGC CTTTAACATT TGGTTATGAA GTGGAAGATG ACGAGGGAAA TAATGTAGGA
CTGGTAGGTC AGGGGAGCCG GGTATTTATT CGTACTGAAA AGGTTCCCAT TTCGGTAAAA
ATCGCAACAG ATAAACAACA GGGTCTTTTC TGTAAGATCA CTTTTGATAA ACAGATTGAT
GAAAATAACG TTTATATTTG TCGGTAA
|
|---|
| Protein sequence | MEKLNAITLS LFAALLISPA WAEEETFDTN FMFGGLKGEK VSRYQIDSTK PMAGVYEMDV
YVNKEWRGTY EVNIQDDPDS TCISPDLIAS LGIKFTPQST TVENECIALK TVVHGGSVSY
DTAAFNLYLS VPQAYVLEYE AGYASPETWD RGINAFYTSY YASEYYSHYK SGGSEKNTYA
NFVSGLNLLG WQLHSNANFS KSENSAGKWQ SNTLYLERDF PAVLGTMRLG EQYTSGDMFD
TVRFRGVRFW RDMQMLPHSK QNFDPVVRGV AQSNALVTVE QNGFIVYQKE VPPGPFVFED
LQLAGGGADL DVSVKEADGT VSRFIVPYSS VPNMVQPGVA KYDFAAGRSR IEGASQQTDF
LQGTYQYGVN NLLTLYGGTM LASDYRSFTL GTGWNTLIGA VSVDGTLSHS KQDNGDVFDG
ESYQVAWNKY LPQSATHFSL AAYRYSSRDY RTFNDHVWAN NRDNYRRDDD DIYDIADYYE
NDFGRKNTFT LNINQTLPDG WGYFTASALW RDYWGRSGTG KDYQLSYSNT WQRLSFTLSA
TQTYDSNNRE DKRFNIYLSI PLTWGLKENG GNRDIHLSNS TTFDDQGYEA NNTSLSGTFG
NRDQFNYTTN LSQQRQEHQT TFGGSVTWNA PLATVGGSYS QSNKYHQVGG NIQGGLVAWA
DGVHLASRLN DTIAIINAPY LEGAAVQGRP YLRTNAKGYA VFEALTPYRQ NFISLDVSES
ESDVALLGNR KVTVPYRGAV VLVHFETETS KPFYFLARRA DGEPLTFGYE VEDDEGNNVG
LVGQGSRVFI RTEKVPISVK IATDKQQGLF CKITFDKQID ENNVYICR
|
|---|
| |