Gene SeD_A2424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2424 
Symbol 
ID6875120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp2295737 
End bp2296681 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content37% 
IMG OID642785514 
Productputative O antigen biosynthesis rhamnosyltransferase 
Protein accessionYP_002216172 
Protein GI198245791 
COG category[R] General function prediction only 
COG ID[COG1216] Predicted glycosyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.126367 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.000645643 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAATAA CATTAATTAT TCCCACATAT AATGCAGGGT CGCTTTGGCC TAATGTTCTG 
GATGCGATTA AGCAGCAAAC TATATATCCG GATAAATTGA TTGTTATAGA CTCAGGTTCT
AAAGATGAAA CGGTTCCGTT AGCCTCAGAC CTGAAAAATA TATCAATATT TAATATTGAC
TCTAAAGATT TTAATCATGG AGGAACCAGA AATTTAGCAG TTGCAAAAAC TCTGGACGCT
GATGTTATAA TTTTTCTAAC GCAAGATGCA ATTCTCGCGG ATTCGGATGC AATTAAAAAT
TTGGTTTATT ATTTTTCAGA TCCATTGATA GCAGCGGTTT GTGGTAGACA ACTTCCTCAT
AAAGATGCTA ATCCCCTTGC AGTGCATGCC AGAAATTTTA ATTATAGTTC AAAATCTATT
GTTAAAAGTA AGGCAGATAT AGAAAAATTG GGTATTAAAA CTGTATTTAT GTCCAATTCT
TTTGCTGCCT ATCGCCGTTC CGTTTTTGAA GAGTTAAGTG GGTTTCCTGA ACATACAATT
CTTGCCGAGG ATATGTTTAT GGCGGCTAAG ATGATTCAGG CGGGTTATAA GGTCGCCTAC
TGCGCTGAAG CGGTGGTAAG ACACTCCCAT AATTATACCC CGCGAGAAGA GTTTCAACGA
TATTTTGATA CTGGTGTATT TCATGCTTGT TCTCCGTGGA TTCAGCGTGA CTTTGGCGGA
GCCGGTGGTG AGGGTTTCCG CTTCGTAAAA TCAGAGATTC AATTCCTGCT TAAAAATGCA
CCGTTCTGGA TTCCAAGAGC TTTATTAACA ACCTTTGCTA AATTCTTGGG TTACAAATTA
GGCAAGCATT GGCAATCTTT ACCGTTGTCT ACATGTCGCT ATTTTAGCAT GTACAAGAGT
TATTGGAATA ATATCCAATA TTCTTCGTCA AAAGAGATAA AATAA
 
Protein sequence
MKITLIIPTY NAGSLWPNVL DAIKQQTIYP DKLIVIDSGS KDETVPLASD LKNISIFNID 
SKDFNHGGTR NLAVAKTLDA DVIIFLTQDA ILADSDAIKN LVYYFSDPLI AAVCGRQLPH
KDANPLAVHA RNFNYSSKSI VKSKADIEKL GIKTVFMSNS FAAYRRSVFE ELSGFPEHTI
LAEDMFMAAK MIQAGYKVAY CAEAVVRHSH NYTPREEFQR YFDTGVFHAC SPWIQRDFGG
AGGEGFRFVK SEIQFLLKNA PFWIPRALLT TFAKFLGYKL GKHWQSLPLS TCRYFSMYKS
YWNNIQYSSS KEIK