Gene SeD_A2402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2402 
Symbol 
ID6873790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp2271991 
End bp2274339 
Gene Length2349 bp 
Protein Length782 aa 
Translation table11 
GC content47% 
IMG OID642785493 
Productsecreted effector protein 
Protein accessionYP_002216151 
Protein GI198245969 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.266317 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAT CATCAGGCGC AATTAATTTT TCTACTATTC CTAACCAGGT TAAAAAATTA 
ATTACCTCTA TTCGTGAACA TACGAAAAAC GGGCTCGCCT CAAAAATAAC CAGTGTTAAA
AACACGCATA CATCTTTAAA TGAAAAATTT AAAACAGGAA AGGACTCACC GATTGAGTTC
GCGTTACCAC AAAAAATAAA AGACTTCTTT CAGCCGAAAG ATAAAAACAC CTTAAACAAA
ACATTGATTA CTGTTAAAAA TATTAAAGAT ACAAATAATG CAGGCAAGAA AAATATTTCA
GCAGAAGATG TCTCAAAAAT GAATGCAGCA TTCATGCGTA AGCATATTGC AAATCAAACA
TGTGATTATA ATTACAGAAT GACAGGTGCG GCCCCGCTCC CCGGTGGAGT CTCTGTATCA
GCCAATAACA GGCCCACGGT TTCTGAAGGT AGAACACCAC CAGTATCCCC CTCCCTCTCA
CTTCAGGCTA CGTCTTCCCC GTCATCACCT GCCGACTGGG CTAAGAAACT CACAGATGCA
GTTTTACGAC AGAAAGCCGG AGAAACCCTT ACGGCCGCAG ATCGCGATTT TTCAAACGCA
GATTTCCGTA ATATTACATT CAGCAAAATA TTGCCCCCCA GCTTCATGGA GCGAGACGGC
GATATTATTA AGGGGTTCAA CTTTTCAAAT TCAAAATTTA CTTATTCTGA TATATCTCAT
TTACATTTTG ACGAATGCCG ATTCACTTAT TCGACACTGA GTGATGTAGT CTGCAGTAAT
ACGAAATTTA GTAATTCAGA CATGAATGAA GTGGTTTTAC AGTATTCAAT TACTACACAA
CAACAGCCCT CTTTTATTGA TACAACATTA AAAAATACGC TTATACGTCA CAAAGCCAAC
CTCTCTGGCG TTATTTTAAA TGAACCGGAT AATTCATCAC CTCCGTCAGT GTCAGGGGGC
GGAAATTTTA TTCGTCTAGG TGATATCTGG CTGCAAATGC CACTCCTTTG GACTGAGAAC
GCTGTGGATG GATTTTTAAA TCATGAGCAC AATAATGGTA AAAGTATTCT GATGACCATT
GACAGCCTGC CCGATAAATA CAGTCAGGAA AAAGTCCAGG CAATGGAAGA CCTGGTTAAG
TCATTGCGGG GTGGCCGCTT AACAGAGGCA TGTATCCGGC CAGTTGAAAG TTCGCTGGTA
AGCGTACTGG CCCACCCTCC CTATACGCAA AGTGCGCTTA TCCGCGAGTG GCTCGGGCCT
GTTCAGGAAC GTTTTTTTGC CCACCAGTGC CAGACCTATA ATGACGTTCC CCTGCCGACT
CCTGACACAT ATTATCAGCA GCGCATACTG CCAGTGTTGC TGGATTCGTT TGACAGGAAC
AGCGCCGCCA TGACCACTCA CAGCGGACTC TTTAATCAGG TGATTTTACA CTGTATGACA
GGCGTGGACT GCACTGATGG CACCCGCCAG AAAGCTGCAG CGCTTTATGA ACAGTATCTT
GCTCACCCGG CGGTGTCTCC CCACATCCAT AATGGGCTCT TCGGCAATTA TGACGGCAGC
TCGGACTGGA CAACCCGCGC TGCAGATAAT TTCCTGCTGC TTTCCTCCCA AGATTCAGAC
ACGGCGATGA TGCTCTCCAC TGACACGCTG TTAACAATGC TAAACCCTAC TCCTGACACT
GCATGGGACA ACTTTTACCT GCTGCGAGCC GGAGAGAACG TTTCCACCGC GCAAATCTCT
CCGGTAGAGT TATTCCGTCA TGACTTTCCG GTGTTTCTCG CCGCATTTAA TCAGCAGGCC
ACGCAGCGAC GCTTTGGGGA GCTGATTGAT ATCATCCTCA GCACTGAAGA GCACGGGGAG
CTGAACCAGC AGTTTATTGC CGCCACGAAC CAGAAACATT CCACCGTGAA GTTGATTGAT
GATGCCTCAG TGTCGCGTCT GGCCACCATT TTTGCCCCCT TGCTTCCTGA AGGCAAACTC
AGCCCGGCAC ACTACCAGCA CATCCTCAGT GCTTATCACC TGACGGACGC CACCCCACAG
AAGCAGGCGG AAACCCTGTT CTGTCTCAGT ACCGCATTCG CACGCTATTC CTCCAGCGCC
ATTTTCGGCA CTGAGCATGA CTCTCCGCCC GCCCTGAGAG GCTATGCGGA GGCGCTGATG
CAGAAAGCCT GGGAGCTGTC TCCGGCGATA TTCCCGTCCA GCGAACAGTT TACCGACTGG
TCCGACCGTT TTCACGGCCT CCATGGCGCC TTTACCTGTA CCAGCGTTGT GGCGGATAGT
ATGCAACGTC ATGCCAGAAA ATATTTCCCG AGTGTTCTGT CATCCATCCT GCCACTGTCC
TGGGCGTAG
 
Protein sequence
MKISSGAINF STIPNQVKKL ITSIREHTKN GLASKITSVK NTHTSLNEKF KTGKDSPIEF 
ALPQKIKDFF QPKDKNTLNK TLITVKNIKD TNNAGKKNIS AEDVSKMNAA FMRKHIANQT
CDYNYRMTGA APLPGGVSVS ANNRPTVSEG RTPPVSPSLS LQATSSPSSP ADWAKKLTDA
VLRQKAGETL TAADRDFSNA DFRNITFSKI LPPSFMERDG DIIKGFNFSN SKFTYSDISH
LHFDECRFTY STLSDVVCSN TKFSNSDMNE VVLQYSITTQ QQPSFIDTTL KNTLIRHKAN
LSGVILNEPD NSSPPSVSGG GNFIRLGDIW LQMPLLWTEN AVDGFLNHEH NNGKSILMTI
DSLPDKYSQE KVQAMEDLVK SLRGGRLTEA CIRPVESSLV SVLAHPPYTQ SALIREWLGP
VQERFFAHQC QTYNDVPLPT PDTYYQQRIL PVLLDSFDRN SAAMTTHSGL FNQVILHCMT
GVDCTDGTRQ KAAALYEQYL AHPAVSPHIH NGLFGNYDGS SDWTTRAADN FLLLSSQDSD
TAMMLSTDTL LTMLNPTPDT AWDNFYLLRA GENVSTAQIS PVELFRHDFP VFLAAFNQQA
TQRRFGELID IILSTEEHGE LNQQFIAATN QKHSTVKLID DASVSRLATI FAPLLPEGKL
SPAHYQHILS AYHLTDATPQ KQAETLFCLS TAFARYSSSA IFGTEHDSPP ALRGYAEALM
QKAWELSPAI FPSSEQFTDW SDRFHGLHGA FTCTSVVADS MQRHARKYFP SVLSSILPLS
WA