| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2271 |
|---|
| Symbol | |
|---|
| ID | 6873019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 2165627 |
|---|
| End bp | 2167360 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642785369 |
|---|
| Product | putative phage terminase, large subunit |
|---|
| Protein accession | YP_002216031 |
|---|
| Protein GI | 198243032 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4626] Phage terminase-like protein, large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.441488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000000000000278373 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGA AATCATATCC CAACGTTAAC GCCGCTAATC AGTATGCCCG CAACGTTGTG
CGGGGAAAAA TCACGGCATG TCAGTATGTC ATTCAGGCCT GCCAGCGTCA CATTGATGAT
ATGGCGGCGG AGAAGAGTAA AAGGTTTCGG TACCGCTTTG ATAAAGACAT GGCTGAGAAA
GCTGCAAAGT TTATTCAGTT ACTTCCACAT ACAAAAGGTG AATGGGCGTT CAAACGTATG
CCGATTACCC TGGAACCGTG GCAACTTTTC ATCGTGTGCT GTGCCTTTGG CTGGGTACAG
AAGGGAACAA AGCTTCGTCG TTTTCGTGAG GTCTACACAG AGATACCACG TAAGAACGGG
AAATCGGCTA TTTCAGCTGG TGTAGCTCTC TACTGTTTCA CCTGTGATAA CGAATTCGGT
GCGGAAGTAT ACTCCGGCGC CACGACTGAA AAACAGGCGT GGGAGGTATT TCGTCCCGCG
CGTCTGATGT GTAAGCGCAC ACCACTACTG GTGGAGGCAT TCGGTATAGA GGTGAATGCC
TCAAACCTGA ACCGTCCGGA GGATGGTGCC CGCTTCGAGC CGTTGATCGG CAACCCCGGG
GACGGGGCAT CACCGCACTG CGCAATAGTT GACGAATACC ACGAACACCC TACGGATGCG
CTCTACACAA CAATGCTTAC AGGTATGGGC GCGCGCCGAC AGCCGCTGAT GTGGGCAATA
ACCACGGCGG GCTACAACAT CGAGGGGCCG TGTTACGACA AGCGACGCGA AGTGATTGAG
ATGCTGAACG GATCGGTGCC GAACAACGAA CTTTTTGGCG TGATTTACAC GGTTGATGAA
GGGGATGACT GGACAGATCC AAAAGTGCTG GAGAAAGCAA ACCCGAACAT TGGGGTGTCA
GTATACCGTG ACTTCCTTCT CAGTCAGCAA CAGCGTGCTA TTAACAATGC CCGCCATGCG
GGTGTGTTCA AAACGAAGCA TCTCAATGTA TGGGTTGCCG CCCGCACAGC ATTCTTTAAT
CTGGTTTCCT GGCAAAACTG TGAGGATAAG ACGCTGACGC TGGAACTGTT TGAGGGTCAA
CCCTGCGTAC TGGCGTTCGA TCTGGCTCGT AAGCTGGACA TGAACAGCAT GGCGAGGTTA
TTTACCCGTG AAATAGACGG GAAAACGCAT TTTTACAGCG TGGCGCCACG TTTCTGGGTG
CCGTATGACA CGGTCTACAG TGTTGAGAAA AATGAGGATC GCCGTACTGC GGAACGTTTT
CAGAAATGGG TTGAAATGGG CTTTTTGACA GTAACTGATG GTGCGGAGGT GGATTACCGC
TACATCCTTG AAGAGGCCAA AGCTGCGAAC AAACTGAACC CGGTCAGCGA ATCCCCCATT
GATCCATTTG GTGCCACCGG GCTTTCACAT GATCTAGCTG ATGAAAACCT GAATCCCGTC
ACTATCATCC AGAATTACAC CAACATGTCC GATCCGATGA AAGAACTGGA AGCGGCGATT
GAATCGGGTC GCTTTCATCA TGACGGCAAT CCCATCATGA CCTGGTGTAT CGGCAACGTG
GTCGGCAAAA CCATTCCGGG TAACGATGAC GTGGTGAAGC CTATTAAGGA GCAGGCGGAA
AATAAAATCG ATGGTGCAGT TGCACTGATT ATGGCGGTTG GCAGAGCCAT GCTGTACGAG
AAAGAAGACA CGCTGTCTGA CCACATTGAG TCCTACGGGA TCCGCTCGCT TTAA
|
|---|
| Protein sequence | MSRKSYPNVN AANQYARNVV RGKITACQYV IQACQRHIDD MAAEKSKRFR YRFDKDMAEK
AAKFIQLLPH TKGEWAFKRM PITLEPWQLF IVCCAFGWVQ KGTKLRRFRE VYTEIPRKNG
KSAISAGVAL YCFTCDNEFG AEVYSGATTE KQAWEVFRPA RLMCKRTPLL VEAFGIEVNA
SNLNRPEDGA RFEPLIGNPG DGASPHCAIV DEYHEHPTDA LYTTMLTGMG ARRQPLMWAI
TTAGYNIEGP CYDKRREVIE MLNGSVPNNE LFGVIYTVDE GDDWTDPKVL EKANPNIGVS
VYRDFLLSQQ QRAINNARHA GVFKTKHLNV WVAARTAFFN LVSWQNCEDK TLTLELFEGQ
PCVLAFDLAR KLDMNSMARL FTREIDGKTH FYSVAPRFWV PYDTVYSVEK NEDRRTAERF
QKWVEMGFLT VTDGAEVDYR YILEEAKAAN KLNPVSESPI DPFGATGLSH DLADENLNPV
TIIQNYTNMS DPMKELEAAI ESGRFHHDGN PIMTWCIGNV VGKTIPGNDD VVKPIKEQAE
NKIDGAVALI MAVGRAMLYE KEDTLSDHIE SYGIRSL
|
|---|
| |