| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2187 |
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| Symbol | rne |
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| ID | 6873837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 2095438 |
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| End bp | 2098644 |
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| Gene Length | 3207 bp |
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| Protein Length | 1068 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642785289 |
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| Product | ribonuclease E |
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| Protein accession | YP_002215952 |
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| Protein GI | 198245804 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.33181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00000000773492 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTAATCAA CGCGACTCAG CAGGAAGAGT TGCGCGTCGC CCTTGTAGAT
GGGCAGCGTC TGTACGATCT GGATATAGAA AGCCCCGGAC ACGAGCAGAA AAAAGCGAAC
ATCTATAAAG GCAAAATTAC CCGTATTGAA CCGAGCCTGG AAGCGGCTTT TGTTGATTAC
GGCGCAGAAC GCCACGGTTT CCTCCCGTTA AAAGAAATTG CCCGCGAATA TTTCCCCGCT
AACTACAGCG CTCATGGTCG CCCGAACATT AAAGACGTGT TACGCGAAGG CCAGGAAGTC
ATTGTTCAAA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCGTTAAC CACCTTTATC
AGTCTGGCGG GCAGCTACCT GGTACTGATG CCGAATAACC CGCGCGCGGG TGGTATTTCC
CGTCGCATTG AAGGCGACGA TCGTACCGAG TTAAAAGAAG CGTTGGCCAG CCTGGAACTT
CCTGAAGGGA TGGGGCTTAT CGTACGTACC GCGGGCGTGG GTAAATCCGC CGAAGCGTTG
CAGTGGGATT TAAGCTTCCG CCTGAAACAC TGGGAGGCCA TTCAGAAAGC CGCTGAAAGC
CGTCCCGCGC CGTTCCTGAT CCATCAGGAA AGCAACGTCA TCGTACGCGC GTTTCGCGAC
TATCTGCGTC AGGATATCGG TGAAATCCTG ATCGACAATC CAAAAGTGAT GGAAATGGCG
CGTCAGCATA TCGCCGCGTT GGGCCGCCCG GATTTTAGCA GCAAAATTAA GCTGTACACC
GGTGAAATCC CGTTGTTCAG CCATTACCAG ATCGAATCGC AGATCGAGTC AGCGTTCCAG
CGTGAAGTGC GCCTGCCCTC CGGCGGCTCC ATCGTCATTG ACAGTACCGA AGCGTTAACC
GCCATCGATA TCAACTCCGC CCGCGCGACT CGCGGCGGCG ATATCGAAGA AACGGCGTTT
AATACCAACC TGGAAGCGGC CGATGAGATT GCCCGCCAGT TGCGTCTGCG CGACCTGGGC
GGCCTGATCG TTATCGACTT TATCGATATG ACGCCGGTAC GTCACCAGCG CGCGGTAGAA
AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGGGCGCGTA TTCAGATTAG CCATATTTCC
CGCTTCGGCC TGCTCGAAAT GTCGCGTCAG CGCCTGAGCC CGTCGCTGGG CGAATCCAGC
CATCACGTGT GTCCGCGCTG TAGCGGTACC GGCACCGTGC GCGATAACGA ATCTCTGTCG
CTGTCCATTC TGCGCCTGAT TGAAGAAGAA GCGCTGAAAG AGAATACGCA GGAAGTCCAT
GCCATTGTTC CGGTGCCGAT CGCCTCTTAT CTGCTTAACG AAAAACGGAC GGCAGTTAAC
GCTATTGAGA CGCGTCAGGA TGGCGTCCGC TGTGTCATCG TCCCGAACGA TCAGATGGAA
ACGCCGCACT ATTCCGTGCT GCGCGTACGC AAAGGGGAAG AAACGCCGAC CCTGAGCTAC
ATGCTGCCGA AGCTGCACGA AGAAGCGATG GCGCTGCCTT CTGAAGAAGA GTACGCCGAG
CGTAAACGCC CGGAACAGCC TGCGCTGGCG ACATTCGCTA TGCCAGATGT GCCTCCGGCG
CCGACGCCTG TCGAACCGGC GGTTAGCGTC GCCACGGCGA AAAAGGATAA TGTTGCCGCC
GCGCAGCCTG CCCAGCCGGG TCTGTTTAGC CGCTTCCTTA ACGCGCTGAA ACAACTGTTC
AGCGGTGAAG AAACGAAAGC CGTCGAAACA GCCGCGCCGA AAGCGGAAGA AAAAGCGGAG
CGTCAGCAGG ATCGTCGCAA GCCACGGCAG AACAACCGTC GCGATCGTAA CGAACGCCGC
GACACCCGTG ATAACCGTGC CGGACGTGAC GGCGGCGAGA GCCGCGACGA TAATCGTCGT
AACCGTCGCC AGACGCAGCA GCAAAATGCG GAAGCGCGCG ATACCCGCCA GCAGGAAACG
GCGGAAAAAG TGAAAACCGG CGATGAACAG CAACAGACGC CGCGTCGCGA ACGCAGCCGC
CGCCGCAATG ATGACAAGCG CCAGGCGCAG CAGGAAGTAA AAGCGCTTAA CCGCGAAGAA
CAGCCTGTCC AGGAGACCGA GCAGGAAGAA CGCGTTCAGC AGGTTCAGCC GCGCCGCAAG
CAGCGTCAGC TTAATCAGAA AGTCCGCTTT ACCAACAGCG CAGTGGTTGA AACGGTTGAC
ACGCCGGTCG TCGTCGACGA ACCACGCCCG TTTGAAAACG TTGAACAGCC CGTTCCAGCG
CCGCGTACCG AGCTGGCGAA AGTTGATTTA CCTGTCGTCG CCGATATCGC GCCGGAGCAG
GATGATAGCG TAGAACCTCG CGATAATACC GGTATGCCGC GTCGCTCCCG CCGTTCTCCG
CGCCACCTGC GCGTAAGCGG TCAGCGTCGC CGTCGCTATC GTGACGAGCG CTACCCGACA
CAATCGCCGA TGCCGTTAAC CGTCGCCTGC GCGTCGCCGG AAATGGCGTC CGGTAAAGTC
TGGATCCGCT ACCCGATTGT CCGTCCTCAG GAAACGCAGG TTGTTGAAGA GCAGCGTGAA
GCAGATCTGG CGCTGCCACA ATCGGTTGTC GCTGAACAGC AGGTTATCGC TGCGACCGTA
GTGCTCGAAC CACAAGCGTC GGTACAGGCA GTAGAAAACG TTGCCGTTGA GCCGCAGACC
GTCGCCGAAC CACAGACGTC GGAAGTCGTC GAGGTCGAGA CAACGCATCC GGAAGTCATT
GCCGCGCCAG TTGATGAACA GCCGCAACTG ATTGCCGAAA GCGATACGCC GGAAGCGCAA
GAGGTTATTG CTGACGCCGA ACCGGTAGCA GAAACCGCCG ACGCGTCCAT TACGGTGGCT
GAAAACGTGG CTGATGTTGT CGTTGTCGAG CCAGAAGAAG AGACAAAAGC GGAAGCGGCT
GTTGTGGAGC ACACGGCAGA AGAAACCGTT ATCGCACCGG CCCAGGTGGT GGAAAAGCCG
CAGGACGTTG TCTGCGTTGA CGACGATCAT AATCACGCCA GCGCGCCGAT GACGCGTGCG
CCAGCGCCGG AATATGTGCC GGAAACCCCG CACCATAGCG ACTGGCAGCG CCCTTCCTTC
CACTTTGAAG GTAAAGGCGC AGCAGGCGGA CACAGCGCCA CACGTCACGC CAGCGCCCCG
GCGACACGCC CACAGCCGGT AGAATGA
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| Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY
GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL
QWDLSFRLKH WEAIQKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVMEMA
RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE
NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRTAVN AIETRQDGVR CVIVPNDQME
TPHYSVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEYAE RKRPEQPALA TFAMPDVPPA
PTPVEPAVSV ATAKKDNVAA AQPAQPGLFS RFLNALKQLF SGEETKAVET AAPKAEEKAE
RQQDRRKPRQ NNRRDRNERR DTRDNRAGRD GGESRDDNRR NRRQTQQQNA EARDTRQQET
AEKVKTGDEQ QQTPRRERSR RRNDDKRQAQ QEVKALNREE QPVQETEQEE RVQQVQPRRK
QRQLNQKVRF TNSAVVETVD TPVVVDEPRP FENVEQPVPA PRTELAKVDL PVVADIAPEQ
DDSVEPRDNT GMPRRSRRSP RHLRVSGQRR RRYRDERYPT QSPMPLTVAC ASPEMASGKV
WIRYPIVRPQ ETQVVEEQRE ADLALPQSVV AEQQVIAATV VLEPQASVQA VENVAVEPQT
VAEPQTSEVV EVETTHPEVI AAPVDEQPQL IAESDTPEAQ EVIADAEPVA ETADASITVA
ENVADVVVVE PEEETKAEAA VVEHTAEETV IAPAQVVEKP QDVVCVDDDH NHASAPMTRA
PAPEYVPETP HHSDWQRPSF HFEGKGAAGG HSATRHASAP ATRPQPVE
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