| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2153 |
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| Symbol | mfd |
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| ID | 6872106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 2064660 |
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| End bp | 2068106 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642785259 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002215922 |
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| Protein GI | 198242225 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.164525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.0000432293 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGAAA AACAACGTTA CACGCTGCCG ACAAAAGCGG GCGATCAGCG CCAGTTGGGC
GAACTTACCG GTGCCGCCTG CGCTACGCTG GTGGCGGAGA TAGCCGAACG CCATGCCGGT
CCGGTGGTAC TCATAGCGCC TGACATGCAA AATGCTCTGC GATTGCATGA TGAAATCCGC
CAGTTTACCG ATCAGATGGT GATGAACCTG GCGGACTGGG AAACGCTACC GTATGACAGC
TTCTCCCCGC ATCAGGAAAT TATCTCTTCG CGCCTGTCCA CGCTCTACCA GTTGCCGTCG
ATGCAGCGCG GCGTCTTGAT TGTACCGGTA AACACCCTGA TGCAGCGCGT TTGTCCGCAT
AGCTATCTGC ATGGTCATGC GCTGGTGATG AAAAAAGGCC AGCGGCTGTC CCGCGACGCT
CTGCGCGCGC AGCTTGACAG CGCCGGTTAT CGGCATGTCG ATCAGGTGAT GGAGCATGGC
GAATACGCGA CGCGCGGCGC GCTGTTGGAT CTCTTTCCGA TGGGCAGCGA ACAGCCTTAT
CGCCTCGACT TTTTTGATGA TGAAATCGAC AGCCTGCGTC TGTTTGACGC GGATACCCAG
CGTACGCTGG AGGAGGTCGA GGCCATCAAT TTGTTGCCCG CGAACGAATT TCCTACCGAC
AAAGCCGCTA TTGAGCTTTT CCGTAGCCAG TGGCGCGATA CCTTTGAGGT AAAACGCGAC
GCCGAACACA TCTATCAGCA GGTCAGCAAA GGCACCTTGC CCGCCGGGAT CGAATACTGG
CAGCCGCTCT TTTTCAGCGA ACCGTTACCG CCATTATTTA GCTATTTCCC CGCCAATACT
CTGGTGGTGA ATACTGGCTC GCTGGAAACC AGCGCCGAAC GCTTTCAGGC CGATACGCTG
GCGCGTTTTG AAAATCGCGG CGTCGATCCT ATGCGCCCGC TTTTGCCGCC GGAAGCCCTC
TGGCTACGGG TAGATGAGCT CTTTTCCGAG CTTAAACGCT GGCCTCGCCT CCAGCTTAAA
ACCGACCATC TGCCGGAAAA AGCCGCCAAT ACCAATCTTG GTTTCCAGAA ATTACCGGAT
TTGGCTATCC AGGCACAGCA GAAAGCGCCG CTGGACGCGC TGCGTAAGTT CCTCGAATCT
TTCAGCGGCC CGGTGATTTT TTCTGTGGAA AGCGAAGGAC GCCGCGAAGC GCTGGGAGAG
CTCCTGGCTC GCATAAAAAT CGCGCCGAAG CGGATATTAC GCCAGGACGA GGCGCAGGAT
GCGGGACGCT ATCTGATGAT TGGCGCCGCA GAACATGGCT TTATCGACAC CCAACGCAAT
CTGGCGCTGA TTTGTGAAAG CGATCTTTTG GGTGAGCGGG TGGCGCGTCG CCGCCTGGAT
TCCCGCCGCA CGATCAACCC GGATACGTTG ATTCGTAACC TGGCGGAGCT CCACGTCGGT
CAACCGGTAG TGCATCTGGA GCACGGCGTC GGACGCTATG CCGGCATGAC CACTCTGGAG
GCTGGCGGCA TCAAGGGTGA GTATCTGATG CTCACCTACG CCAATGACGC CAAACTGTAT
GTGCCGGTCT CCTCATTGCA TCTGATTAGC CGCTATGCCG GCGGCGCGGA AGAAAGTGCG
CCGCTGCATA AACTGGGCGG CGACGCCTGG TCGCGCGCCC GGCAGAAAGC GGCGGAAAAA
GTGCGCGATG TCGCAGCGGA ACTGTTGGAT ATTTATGCGC AACGGGCGGC AAAAGAGGGG
TTTGCCTTTA AGCATGATCG TGAGCAGTAT CAGTTATTCT GCGACAGCTT CCCGTTTGAA
ACGACGCCCG ATCAGGCACA GGCGATTAAC GCCGTATTGA GCGATATGTG CCAACCGCTG
GCGATGGACA GGCTGGTGTG CGGCGACGTC GGCTTCGGCA AAACCGAAGT GGCGATGCGC
GCCGCGTTCC TGGCAGTGGA AAACCATAAA CAAGTAGCGG TACTGGTGCC AACCACGCTG
CTGGCGCAGC AACACTATGA TAACTTCCGC GACCGTTTCG CCAACTGGCC GGTACGCATT
GAGATGCTGT CCCGCTTTCG CAGCGCCAAA GAGCAGACAC AAATCCTGGC GGAAGCCGCC
GAGGGTAAGA TCGATATTCT GATCGGTACG CATAAACTGC TACAAAGCGA TGTGAAGCTG
CGCGACCTGG GCCTGCTGAT TGTCGATGAA GAGCACCGTT TCGGCGTGCG CCACAAAGAG
CGAATTAAGG CGATGCGCGC CGATGTCGAT ATTCTGACGC TCACGGCGAC GCCGATCCCG
CGGACGCTGA ATATGGCGAT GAGCGGTATG CGCGATCTCT CCATTATCGC CACTCCCCCT
GCCCGTCGTC TGGCGGTAAA AACCTTTGTT CGCGAGTATG ATAGCCTGGT AGTAAGGGAA
GCGATTCTGC GTGAAATCCT GCGCGGCGGT CAGGTTTACT ATTTGTACAA TGACGTCGAA
AATATTCAGA AAGCCGCAGA GCGGCTGGCG GAACTGGTAC CGGAAGCGCG AATCGCTATA
GGCCACGGGC AGATGCGTGA ACGTGAGCTG GAACGGGTCA TGAACGATTT CCACCATCAA
CGTTTTAACG TGCTGGTGTG TACTACCATT ATCGAAACGG GGATCGACAT TCCCACCGCT
AACACGATCA TCATTGAACG CGCGGATCAT TTCGGCCTCG CGCAGTTGCA CCAGCTGCGT
GGCCGCGTTG GGCGCTCGCA CCACCAGGCC TACGCCTGGC TGTTGACGCC ACATCCTAAG
GCCATGACCA CCGATGCGCA AAAACGGCTG GAGGCGATTG CGTCGCTGGA GGATTTAGGC
GCCGGGTTTG CGCTGGCGAC CCACGACCTG GAGATCCGCG GCGCGGGCGA ACTGCTTGGC
GAAGAGCAAA GCGGCTCAAT GGAAACCATT GGCTTCTCAC TCTACATGGA ACTGCTGGAA
AACGCCGTCG ATGCGCTGAA AGCAGGCCGC GAACCCTCGC TGGAAGATCT CACCAGTCAG
CAAACGGAAG TCGAGCTGCG AATGCCGTCG TTGCTGCCAG ATGATTTTAT TCCGGATGTT
AATACCCGGC TGTCATTCTA TAAACGCATT GCCAGCGCGA AGAACGAAAA CGAGCTAGAG
GAGATCAAAG TGGAATTGAT CGACCGCTTC GGCCTGCTGC CCGATCCGGC GCGTAATCTG
CTGGATATCG CCCGCCTGCG CCAACAGGCG CAAAAGCTCG GCATCCGAAA ACTGGAGGGT
AACGAGAAAG GCGGAACGAT TGAGTTCGCC GAGAAAAACC ACGTTGACCC CGCCTGGCTT
ATCGGGTTGC TGCAAAAACA GCCGCAGCAT TTCCGTCTGG ATGGCCCGAC GCGCCTCAAG
TTTATTCAGG ATTTAAGCGA ACGTAAAACG CGTATAGACT GGGTACGCCA GTTTATGCAG
CAACTGGAAG AAAACGCTAT TGCATAA
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| Protein sequence | MPEKQRYTLP TKAGDQRQLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIR
QFTDQMVMNL ADWETLPYDS FSPHQEIISS RLSTLYQLPS MQRGVLIVPV NTLMQRVCPH
SYLHGHALVM KKGQRLSRDA LRAQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSEQPY
RLDFFDDEID SLRLFDADTQ RTLEEVEAIN LLPANEFPTD KAAIELFRSQ WRDTFEVKRD
AEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LVVNTGSLET SAERFQADTL
ARFENRGVDP MRPLLPPEAL WLRVDELFSE LKRWPRLQLK TDHLPEKAAN TNLGFQKLPD
LAIQAQQKAP LDALRKFLES FSGPVIFSVE SEGRREALGE LLARIKIAPK RILRQDEAQD
AGRYLMIGAA EHGFIDTQRN LALICESDLL GERVARRRLD SRRTINPDTL IRNLAELHVG
QPVVHLEHGV GRYAGMTTLE AGGIKGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEESA
PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE
TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVENHK QVAVLVPTTL
LAQQHYDNFR DRFANWPVRI EMLSRFRSAK EQTQILAEAA EGKIDILIGT HKLLQSDVKL
RDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI
GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR
GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRMPS LLPDDFIPDV
NTRLSFYKRI ASAKNENELE EIKVELIDRF GLLPDPARNL LDIARLRQQA QKLGIRKLEG
NEKGGTIEFA EKNHVDPAWL IGLLQKQPQH FRLDGPTRLK FIQDLSERKT RIDWVRQFMQ
QLEENAIA
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