| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2149 |
|---|
| Symbol | lolE |
|---|
| ID | 6874598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 2061185 |
|---|
| End bp | 2062429 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642785255 |
|---|
| Product | outer membrane-specific lipoprotein transporter subunit LolE |
|---|
| Protein accession | YP_002215918 |
|---|
| Protein GI | 198244849 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family
[TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.858827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.00078948 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCGC CTTTATCATT GTTAATTGGC TTGCGTTTTA GCCGTGGACG GCGGCGCGGC
GGTATGGTTT CGCTCATTTC CGTCATTTCT ACCATCGGTA TCGCGCTGGG CGTGGCGGTA
TTGATTGTCG GTTTAAGCGC GATGAACGGT TTCGAACGCG AGTTGAATAA CCGTATTCTG
GCGGTGGTTC CGCACGGGGA GATTGAAGCG GTCAATCAGC CGTGGACCAA CTGGCGTGAA
GCGCTGGCAA AAGTGCAGAA GGTACCGGGC ATTGCCGCCG CCGCGCCGTA TATCAATTTT
ACCGGCCTGG TAGAGAGCGG AGCGAATTTG CGCGCCATTC AGGTTAAAGG CGTCGACCCT
AAGCAAGAGC AGCAGCTTAG CGCGTTACCG TCATTTGTGC AAAATCACGC CTGGGATCAT
TTCAAAGCGG GCGAGCAGCA GATCATTATC GGTAAAGGCG TCGCCGATGC GCTGAACGTG
AAACAGGGCG ACTGGGTGTC CATCATGATC CCCAATGCGA ATGCCGACCA TAAGCTGCTC
CAGCCCAAAC GCGTGCGTTT GCATGTCATT GGGATTCTGC AACTGAGCGG CCAGCTCGAT
CACAGCTTCG CCATGATCCC GCTTGAGGAT GCGCAGCAGT ATCTGGATAT GGGGTCCAGC
GTTTCCGGTA TCGCGCTTAA AGTCCATGAC GTGTTTAATG CGAACAAACT GGTGCGTGAC
GCGGGTGAGG TGACTAACAG CTATGTCTAC ATTAAGAGCT GGATCGGCAC CTACGGCTAT
ATGTATCGCG ATATCCAGAT GATTCGCGCC ATTATGTATC TGGCGATGAT TCTGGTGATC
GGCGTGGCCT GTTTTAATAT CGTTTCCACC TTAGTGATGG CGGTAAAAGA CAAAAGCGGC
GACATTGCGG TATTAAGAAC GCTGGGGGCG AAAGATGGTT TGATTCGTGC CATTTTCGTC
TGGTACGGGC TACTGGCGGG CTTGCTGGGC AGCTTGATTG GCGTGGCGAT CGGCGTTGTC
GTTTCGCTTC AGCTTACCGC CATTATTAAT GGGATTGAAA AGGAGATCGG GCATCAGTTT
TTGTCCGGCG ATATCTATTT TATCGACTTC CTGCCATCCG AATTACATTG GCTGGACGTT
GTTTACGTAC TGGTCACGGC GTTGTTGTTA AGCTTACTGG CGAGCTGGTA TCCGGCGCGG
CGGGCGAGCA ACATTGACCC TGCGCGAGTA TTGAGCGGGC AGTAA
|
|---|
| Protein sequence | MASPLSLLIG LRFSRGRRRG GMVSLISVIS TIGIALGVAV LIVGLSAMNG FERELNNRIL
AVVPHGEIEA VNQPWTNWRE ALAKVQKVPG IAAAAPYINF TGLVESGANL RAIQVKGVDP
KQEQQLSALP SFVQNHAWDH FKAGEQQIII GKGVADALNV KQGDWVSIMI PNANADHKLL
QPKRVRLHVI GILQLSGQLD HSFAMIPLED AQQYLDMGSS VSGIALKVHD VFNANKLVRD
AGEVTNSYVY IKSWIGTYGY MYRDIQMIRA IMYLAMILVI GVACFNIVST LVMAVKDKSG
DIAVLRTLGA KDGLIRAIFV WYGLLAGLLG SLIGVAIGVV VSLQLTAIIN GIEKEIGHQF
LSGDIYFIDF LPSELHWLDV VYVLVTALLL SLLASWYPAR RASNIDPARV LSGQ
|
|---|
| |