Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2145 |
Symbol | potC |
ID | 6874025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 2057473 |
End bp | 2058252 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642785251 |
Product | spermidine/putrescine ABC transporter membrane protein |
Protein accession | YP_002215914 |
Protein GI | 198243884 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 0.00722859 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATCGGTC GGCTGCTCCG TGGCGGTTTC ATGACTGCCA TCTATGCGTA TCTGTATATT CCCATCATTA TTCTGATCGT GAACTCCTTC AACAGTTCGC GGTTCGGCAT TAACTGGCAG GGCTTTACCA CTAAATGGTA CGATCTACTG GTCAATAACG ACAGTCTGTT GCAGGCCGCT CAACATTCAC TGACGATGGC GATTTTCTCA GCGACCTTCG CCACGTTGAT TGGCTCGTTA ACCGCGGTGG CGCTTTATCG CTACCGCTTT CGCGGGAAAC CATTCGTCAG CGGGATGCTG TTTGTAGTAA TGATGTCGCC GGATATCGTG ATGGCGATCT CCCTGCTGGT GCTGTTTATG TTACTCGGCA TTCAACTGGG CTTTTGGTCG TTGCTGTTCT CACACATCAC CTTTAGCCTG CCGTTTGTGG TCGTCACGGT CTATTCGCGC CTGAAAGGCT TTGATGTCAG AATGCTGGAA GCCGCAAAAG ACCTGGGGGC CAGTGAGGTA ACGATTTTAC GCAAAATCAT TCTGCCGCTG GCGATGCCGG CGGTGGCGGC GGGCTGGTTG CTGAGCTTTA CGTTGTCGAT GGACGATGTA GTGGTCTCGT CGTTTGTCAC CGGGCCGGGC TATGAAATTT TACCCTTAAA GATTTATTCC ATGGTAAAAG TCGGCGTTTC ACCAGAAGTG AACGCGCTGG CGACCGTTTT ATTGGTGCTG TCTCTGGTAA TGGTCATTGC CAGCCAGCTT ATTGCTCGTG ATAAAACCAA GGGCCGATAA
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Protein sequence | MIGRLLRGGF MTAIYAYLYI PIIILIVNSF NSSRFGINWQ GFTTKWYDLL VNNDSLLQAA QHSLTMAIFS ATFATLIGSL TAVALYRYRF RGKPFVSGML FVVMMSPDIV MAISLLVLFM LLGIQLGFWS LLFSHITFSL PFVVVTVYSR LKGFDVRMLE AAKDLGASEV TILRKIILPL AMPAVAAGWL LSFTLSMDDV VVSSFVTGPG YEILPLKIYS MVKVGVSPEV NALATVLLVL SLVMVIASQL IARDKTKGR
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