Gene SeD_A2145 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2145 
SymbolpotC 
ID6874025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp2057473 
End bp2058252 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content51% 
IMG OID642785251 
Productspermidine/putrescine ABC transporter membrane protein 
Protein accessionYP_002215914 
Protein GI198243884 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1177] ABC-type spermidine/putrescine transport system, permease component II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.00722859 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCGGTC GGCTGCTCCG TGGCGGTTTC ATGACTGCCA TCTATGCGTA TCTGTATATT 
CCCATCATTA TTCTGATCGT GAACTCCTTC AACAGTTCGC GGTTCGGCAT TAACTGGCAG
GGCTTTACCA CTAAATGGTA CGATCTACTG GTCAATAACG ACAGTCTGTT GCAGGCCGCT
CAACATTCAC TGACGATGGC GATTTTCTCA GCGACCTTCG CCACGTTGAT TGGCTCGTTA
ACCGCGGTGG CGCTTTATCG CTACCGCTTT CGCGGGAAAC CATTCGTCAG CGGGATGCTG
TTTGTAGTAA TGATGTCGCC GGATATCGTG ATGGCGATCT CCCTGCTGGT GCTGTTTATG
TTACTCGGCA TTCAACTGGG CTTTTGGTCG TTGCTGTTCT CACACATCAC CTTTAGCCTG
CCGTTTGTGG TCGTCACGGT CTATTCGCGC CTGAAAGGCT TTGATGTCAG AATGCTGGAA
GCCGCAAAAG ACCTGGGGGC CAGTGAGGTA ACGATTTTAC GCAAAATCAT TCTGCCGCTG
GCGATGCCGG CGGTGGCGGC GGGCTGGTTG CTGAGCTTTA CGTTGTCGAT GGACGATGTA
GTGGTCTCGT CGTTTGTCAC CGGGCCGGGC TATGAAATTT TACCCTTAAA GATTTATTCC
ATGGTAAAAG TCGGCGTTTC ACCAGAAGTG AACGCGCTGG CGACCGTTTT ATTGGTGCTG
TCTCTGGTAA TGGTCATTGC CAGCCAGCTT ATTGCTCGTG ATAAAACCAA GGGCCGATAA
 
Protein sequence
MIGRLLRGGF MTAIYAYLYI PIIILIVNSF NSSRFGINWQ GFTTKWYDLL VNNDSLLQAA 
QHSLTMAIFS ATFATLIGSL TAVALYRYRF RGKPFVSGML FVVMMSPDIV MAISLLVLFM
LLGIQLGFWS LLFSHITFSL PFVVVTVYSR LKGFDVRMLE AAKDLGASEV TILRKIILPL
AMPAVAAGWL LSFTLSMDDV VVSSFVTGPG YEILPLKIYS MVKVGVSPEV NALATVLLVL
SLVMVIASQL IARDKTKGR