| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2106 |
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| Symbol | |
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| ID | 6872367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 2026234 |
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| End bp | 2027868 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642785216 |
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| Product | nickel ABC transporter periplasmic nickel-binding protein |
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| Protein accession | YP_002215881 |
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| Protein GI | 198243726 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.000610577 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCGCC GGGAGAAACA AAAACAACGC ATAATCTGGG ACAAATTGAT GATTAAAGGC
AAACTGGCGC TCGTGACGTG CGCGCTGACT CTGGTATTCA CTTCGTCGCT TTTCGCCGCG
TCGGACACGG CAGACGGTCG TACCCTGAAG CTGGCCATTG GCCCTGAGCC AACGGAAGGC
TTTGATCCTA TGCTGGGCTG GAGCCACGGC AGCTACTTAT TGCTTCATGC GCCGTTGCTT
AAGCAAAACG CCGACATGAG TTGGGGTAAT TTACTGACGG AAAAAGTGGA TACCAGCCCC
GTCGGTAAAA TCTGGACGCT AACCTTAAAG CCCGGGCTGA AATTCTCCGA TGGCTCGCCA
TTAACTGCCG AAGATGTCGT TTTTACATAC AATAAAGCGG CGAAGAGCGG CGGTAAAATT
GACATGGGCA ATTTTAGCCA TGCGCGAGCG CTGGACGCAC GCCGAATTGA GATGACGCTG
AGCCATCCGC AGAGCACCTT TGTGAATGTA CTCGGGTCGT TAGGGATTGT TCCGGCCAGC
CGTTATGATG AAAAAACGTT CGCCCGCGAA CCGATAGGCG CCGGTCCGTA CCGACTGGTC
AGCTTTCAGC CGGGTCAGCA ACTGATCGTT GAAGCTAATC CCTGGTATGC GGGTAAAAAG
AATGACTTTA ACCGGCTGGT TTTTGTCTTT CTGGATGAAG ATAATGCTTA TGCCGCCGCG
CGCAGCGGAC AGTTGGGACT GGTGCGCATT GCCCCTTCTA TGGCGGTGGC CCCGCAGCAG
GATAATCTTA AACTCTGGGT ACGCGATAGC GTTGAAAACC GGGGCATTGT CTTCCCGATG
GTGCCTGCCG GTAAAAAGGA TGCTAACGGT TATCCTGTCG GCAACGATGT GACCGCTGAT
GTCGCTATCA GACGCGCAAT TAACTATGCC ATTAATCGTA AGCAACTGGC GGAACAGGTG
ATGGAAGGCC ATGCGATACC CGCCTATAGC GCGGTGCAGG GATTGCCGTG GCAAAATCCT
TCAGTGATAT TCAGCGATGG CGATATTGCA AAAGCGCGCG CCATCCTGGA AGAGGCTGGC
TGGAAGATAA ACCGTGCGGG CGTGCGTGAA AAAGCGGGTA AAGAAGCGCG TCTGACCTTA
TGGTATGCCA GTGGCGACAG CACCCGACGG GATCTGGCCG AGGCGGTGCG CGCCATGTTG
CAGCCTTTAG GCATTGTCGT CTCGTTGCAA TCGGGAAGCT GGGAAACTGT AGAGCGCCAT
ATGCACGCTA ACCCTACGCT GTTTGGCTGG GGAAGTCTGG ACCCGATGGA ACTCTTCCAT
CACTACAGTG GGAAAGCCGC TGGTGTGGAA TATTATAACC CGGGCTATTA CAGCAACCCT
GCGGTAGAAG CACATCTGAA ACAGGCTATA GATGCGCCTG ACTGGCAAAA GGCGATTCCT
TTCTGGCAGC AGGTTGAGTG GGATGGGAAG CAGGGCGCGG GCGTCCAGGG CGATGCGGCA
TGGGCATGGC TGCTTAATAT TCAGCATACC TATCTGGCCA ACCCCTGTAT TGATCTGGGA
AAAGGCGCGC CAGAAATCCA CGGTAGCTGG TCGGTGTTAA ACAATCTTGA TGACTGGACC
TGGACCTGTC GGTGA
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| Protein sequence | MLRREKQKQR IIWDKLMIKG KLALVTCALT LVFTSSLFAA SDTADGRTLK LAIGPEPTEG
FDPMLGWSHG SYLLLHAPLL KQNADMSWGN LLTEKVDTSP VGKIWTLTLK PGLKFSDGSP
LTAEDVVFTY NKAAKSGGKI DMGNFSHARA LDARRIEMTL SHPQSTFVNV LGSLGIVPAS
RYDEKTFARE PIGAGPYRLV SFQPGQQLIV EANPWYAGKK NDFNRLVFVF LDEDNAYAAA
RSGQLGLVRI APSMAVAPQQ DNLKLWVRDS VENRGIVFPM VPAGKKDANG YPVGNDVTAD
VAIRRAINYA INRKQLAEQV MEGHAIPAYS AVQGLPWQNP SVIFSDGDIA KARAILEEAG
WKINRAGVRE KAGKEARLTL WYASGDSTRR DLAEAVRAML QPLGIVVSLQ SGSWETVERH
MHANPTLFGW GSLDPMELFH HYSGKAAGVE YYNPGYYSNP AVEAHLKQAI DAPDWQKAIP
FWQQVEWDGK QGAGVQGDAA WAWLLNIQHT YLANPCIDLG KGAPEIHGSW SVLNNLDDWT
WTCR
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