Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2060 |
Symbol | |
ID | 6873660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1992854 |
End bp | 1994233 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642785174 |
Product | inner membrane metabolite transport protein YdjE |
Protein accession | YP_002215840 |
Protein GI | 198244082 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.0010058 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAACAGA TAACAAAACC GCACTGCGGC GCCCGGCTGG ATCGCCTGCC GGATTGCCGC TGGCATTCAT CAATGTTTGC CGTCGTCGCC TTTGGTCTGC TTGTTTGCTG GAGTAATGCC GTCGGCGGAT TAATTCTTGC CCAGCTCAAG GAGTTAGGCT GGACCGATAA TTCCACGACA GCCACCTTCT CCGCCATTAC CACGGCGGGG ATGTTTCTCG GCGCGCTGGT GGGCGGCATT ATCGGCGATA AAACCGGACG CAGGAACGCC TTTATTCTTT ATGAAGCGAT TCACATTGCC TCGATGGTCG TGGGCGCATT TTCACCGAAT ATGATGTTCC TGATTGCCTG TCGTTTTGTG ATGGGCGTGG GATTAGGGGC ACTACTGGTC ACGCTGTTCG CCGGATTTAC CGAGTACATG CCCGGCAGAA ACCGGGGAAC CTGGTCGAGT CGCGTTTCGT TTATTGGCAA CTGGTCATAT CCATTGTGTT CCCTGATTGC AATGGGGCTG ACGCCGCTAA TTAGCGCGGA ATGGAACTGG CGCGTGCAGT TACTGATCCC GGCTGTGCTG TCGCTGATTG CTACCGCGCT TGCCTGGCGA TACTTCCCTG AATCTCCCCG CTGGCTGGAA TCGCGCGGGC GTTATCAGGA AGCCGAAAAG GTTATGCAGG CCATTGAAGC AGGCATCGAA CGTCAGACAG GAAAACCGCT GCCGCCGGTT GTTATTGAAA ACAGCGGCAA GCCGCCGCGT TCCGTACCGT ATTCAGCGTT GCTCACTGGC GTATTACTGA AACGCGTTAT TTTGGGTTCC TGCGTGCTGA TTGCCATGAA CGTTGTGCAA TACACGTTAA TTAACTGGCT GCCCACCATC TTTATGACAC AGGGCATCAA CCTCAAAGAT TCGATCGTTT TAAATACCAT GAGTATGTTC GGCGCACCGT TTGGCATATT TATCGCTATG CTGGTAATGG ATAAAATTCC GCGCAAAACC ATGGGTGTCG GTTTATTAAT TCTGATTGCC GTGCTGGGAT ATATTTATTC GCTGCAAACC AGCATGTTGC TTATCACCTT AATTGGCTTT TTCCTGATTA CCTTTGTCTA TATGTATGTC TGTTATGCCT CGGCGGTCTA TGTGCCGGAG ATCTGGCCAA CAGAAGCGAA ACTTCGCGGT TCCGGCCTGG CGAACGCTGT CGGCAGAATC AGCGGTATCG CTGCCCCCTA TGCGGTGGCG GTATTACTCA ACGGTTATGG CGTGACGGGC GTTTTCGTCC TGCTGGGCGC TGTCTCGATT ATCGTCGCCG TCGCAATAGC GACTATCGGA ATCGAGACCA AGGGTGTTTC GGTTGAAAGT CTGAGCATTG ATAAGGTCAC GAGTAAATAA
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Protein sequence | MEQITKPHCG ARLDRLPDCR WHSSMFAVVA FGLLVCWSNA VGGLILAQLK ELGWTDNSTT ATFSAITTAG MFLGALVGGI IGDKTGRRNA FILYEAIHIA SMVVGAFSPN MMFLIACRFV MGVGLGALLV TLFAGFTEYM PGRNRGTWSS RVSFIGNWSY PLCSLIAMGL TPLISAEWNW RVQLLIPAVL SLIATALAWR YFPESPRWLE SRGRYQEAEK VMQAIEAGIE RQTGKPLPPV VIENSGKPPR SVPYSALLTG VLLKRVILGS CVLIAMNVVQ YTLINWLPTI FMTQGINLKD SIVLNTMSMF GAPFGIFIAM LVMDKIPRKT MGVGLLILIA VLGYIYSLQT SMLLITLIGF FLITFVYMYV CYASAVYVPE IWPTEAKLRG SGLANAVGRI SGIAAPYAVA VLLNGYGVTG VFVLLGAVSI IVAVAIATIG IETKGVSVES LSIDKVTSK
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