Gene SeD_A2060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2060 
Symbol 
ID6873660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1992854 
End bp1994233 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content52% 
IMG OID642785174 
Productinner membrane metabolite transport protein YdjE 
Protein accessionYP_002215840 
Protein GI198244082 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.0010058 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAACAGA TAACAAAACC GCACTGCGGC GCCCGGCTGG ATCGCCTGCC GGATTGCCGC 
TGGCATTCAT CAATGTTTGC CGTCGTCGCC TTTGGTCTGC TTGTTTGCTG GAGTAATGCC
GTCGGCGGAT TAATTCTTGC CCAGCTCAAG GAGTTAGGCT GGACCGATAA TTCCACGACA
GCCACCTTCT CCGCCATTAC CACGGCGGGG ATGTTTCTCG GCGCGCTGGT GGGCGGCATT
ATCGGCGATA AAACCGGACG CAGGAACGCC TTTATTCTTT ATGAAGCGAT TCACATTGCC
TCGATGGTCG TGGGCGCATT TTCACCGAAT ATGATGTTCC TGATTGCCTG TCGTTTTGTG
ATGGGCGTGG GATTAGGGGC ACTACTGGTC ACGCTGTTCG CCGGATTTAC CGAGTACATG
CCCGGCAGAA ACCGGGGAAC CTGGTCGAGT CGCGTTTCGT TTATTGGCAA CTGGTCATAT
CCATTGTGTT CCCTGATTGC AATGGGGCTG ACGCCGCTAA TTAGCGCGGA ATGGAACTGG
CGCGTGCAGT TACTGATCCC GGCTGTGCTG TCGCTGATTG CTACCGCGCT TGCCTGGCGA
TACTTCCCTG AATCTCCCCG CTGGCTGGAA TCGCGCGGGC GTTATCAGGA AGCCGAAAAG
GTTATGCAGG CCATTGAAGC AGGCATCGAA CGTCAGACAG GAAAACCGCT GCCGCCGGTT
GTTATTGAAA ACAGCGGCAA GCCGCCGCGT TCCGTACCGT ATTCAGCGTT GCTCACTGGC
GTATTACTGA AACGCGTTAT TTTGGGTTCC TGCGTGCTGA TTGCCATGAA CGTTGTGCAA
TACACGTTAA TTAACTGGCT GCCCACCATC TTTATGACAC AGGGCATCAA CCTCAAAGAT
TCGATCGTTT TAAATACCAT GAGTATGTTC GGCGCACCGT TTGGCATATT TATCGCTATG
CTGGTAATGG ATAAAATTCC GCGCAAAACC ATGGGTGTCG GTTTATTAAT TCTGATTGCC
GTGCTGGGAT ATATTTATTC GCTGCAAACC AGCATGTTGC TTATCACCTT AATTGGCTTT
TTCCTGATTA CCTTTGTCTA TATGTATGTC TGTTATGCCT CGGCGGTCTA TGTGCCGGAG
ATCTGGCCAA CAGAAGCGAA ACTTCGCGGT TCCGGCCTGG CGAACGCTGT CGGCAGAATC
AGCGGTATCG CTGCCCCCTA TGCGGTGGCG GTATTACTCA ACGGTTATGG CGTGACGGGC
GTTTTCGTCC TGCTGGGCGC TGTCTCGATT ATCGTCGCCG TCGCAATAGC GACTATCGGA
ATCGAGACCA AGGGTGTTTC GGTTGAAAGT CTGAGCATTG ATAAGGTCAC GAGTAAATAA
 
Protein sequence
MEQITKPHCG ARLDRLPDCR WHSSMFAVVA FGLLVCWSNA VGGLILAQLK ELGWTDNSTT 
ATFSAITTAG MFLGALVGGI IGDKTGRRNA FILYEAIHIA SMVVGAFSPN MMFLIACRFV
MGVGLGALLV TLFAGFTEYM PGRNRGTWSS RVSFIGNWSY PLCSLIAMGL TPLISAEWNW
RVQLLIPAVL SLIATALAWR YFPESPRWLE SRGRYQEAEK VMQAIEAGIE RQTGKPLPPV
VIENSGKPPR SVPYSALLTG VLLKRVILGS CVLIAMNVVQ YTLINWLPTI FMTQGINLKD
SIVLNTMSMF GAPFGIFIAM LVMDKIPRKT MGVGLLILIA VLGYIYSLQT SMLLITLIGF
FLITFVYMYV CYASAVYVPE IWPTEAKLRG SGLANAVGRI SGIAAPYAVA VLLNGYGVTG
VFVLLGAVSI IVAVAIATIG IETKGVSVES LSIDKVTSK