| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1994 |
|---|
| Symbol | |
|---|
| ID | 6874414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1925808 |
|---|
| End bp | 1927448 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642785110 |
|---|
| Product | short chain acyl-CoA synthetase |
|---|
| Protein accession | YP_002215776 |
|---|
| Protein GI | 198243624 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.194812 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.059614 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTTA CATTAACGTT TGACGCCGCG CGGCGGAAAA CCTATCGCGA GTCCGGCTAC
TGGGGCGATG CTTCACTGGG CGACTACTGG CGGCAAACCG CACGCGCCGT ACCCGATAAA
ATCGCCGTGG TCGATAATCA TGGCGCGTCC TGGACCTACG CTGCGCTCGA CTGCGCGGCA
AGCCGCCTGG CAAACTGGTT ACTGTCTCAG GGGATTCAAC CGGGCGATCG CGTGGCCTTT
CAGCTTCCGG GCTGGTGTGA GTTTACCCTC ATTTATCTGG CCTGCCTGAA AACAGGCGCG
GTATCTGTCC CGCTACTTCC CGCCTGGCGA GAAGCAGAGC TGGTTTGGGT GCTGAACAAA
TGTCAGGCTA AAATATTCTT CGCCCCCACC GTATTCAAAC AGAATCGTCC GGTCGATCTT
ATCCTTCCTC TACAAAATCA ACTGCGCCAT CTGACGCATA TTGTCGGCGT GGATAAACTG
GCGCCTGCCA CCACAGCGCT TGCGCTTAGT CAAATCATCG ACCGCAGCGA ACCGTTGCAG
TCAGACATTA ACATTCACGG TGATGAGCTG GCGGCAGTGC TGTTTACCTC CGGCACAGAA
GGAATGCCGA AAGGGGTGAT GTTGACCCAC AATAATATTC TTGCCAGCGA ACGGGCGTAT
TGCGCGCGGT TGAATTTAAC CTGGCAAGAT GTGTTCCTGA TGCCTGCGCC ACTGGGCCAC
GCCACCGGAT TTTTACACGG CGTCACCGCG CCCTTTTTAA TCGGGGCGCG TAGCGTATTG
CTGGACATCT TTACCCCAGA AGCCTGCCTT ACCTTATTAG CGCAGCAACG CTGTACCTGT
ATGTCAGGCG CGACGCCGTT TATTTACGAT CTGCTTTGTG CCGTTGAGCA ACAGCCTGCC
GACCTCTCCT CACTGCGATT CTTCTTATGC GGCGGCACGA CTATTCCCAA AAAGGTTGCC
CGCGACTGCC AGCAGCGCGG TATCAAATTA TTGAGTATTT ACGGTTCTAC AGAAAGTTCT
CCACACTCGA TGGTTAATCT GGGTGATTCG ACTTCACGCA TGATGAACAC CGATGGTTAT
GCCGCCACCG GTGTAGAAAT TAAAATCGTG GATGAAGATC GCAATACGCT TCCAGCAGGC
CACGAAGGCG AAGAAGCCTC GCGCGGGCCG AACGTTTTTA TGGGATACCT GGACGAGCCG
GAACTTACCG CCCGCGCACT GGATAATGAG GGCTGGTATT ACAGCGGCGA CCTCTGCCGC
ATGGATGAAG ACGGTTATAT CAAAATTACC GGGCGCAAAA AGGATATTAT TATACGTGGA
GGTGAAAATA TCAGCAGTCG CGAGGTGGAG GATATTTTAT TGCAACACCC CCGCATACAC
GATGCTTGCG TCGTTGCTAT GCCTGATGAA CGCTTAGGCG AACGTTCATG CGCGTATGTA
GTCTTAAAAC CACCGCACCT TTCGCTGACG CTGGAAGAGG TGATCGCTTT TTTCAGTCGA
AAACGGGTAG CGAAGTATAA ATATCCGGAA CGGATCGTCA TCGTAGAAAA ACTGCCCAGA
ACCGCCTCTG GCAAAGTGCA GAAGTTTCTG TTGCGGCAGG ATATTATTGA GCGGCTGCGC
CAGGAGCACA CTGCGGTATA A
|
|---|
| Protein sequence | MSVTLTFDAA RRKTYRESGY WGDASLGDYW RQTARAVPDK IAVVDNHGAS WTYAALDCAA
SRLANWLLSQ GIQPGDRVAF QLPGWCEFTL IYLACLKTGA VSVPLLPAWR EAELVWVLNK
CQAKIFFAPT VFKQNRPVDL ILPLQNQLRH LTHIVGVDKL APATTALALS QIIDRSEPLQ
SDINIHGDEL AAVLFTSGTE GMPKGVMLTH NNILASERAY CARLNLTWQD VFLMPAPLGH
ATGFLHGVTA PFLIGARSVL LDIFTPEACL TLLAQQRCTC MSGATPFIYD LLCAVEQQPA
DLSSLRFFLC GGTTIPKKVA RDCQQRGIKL LSIYGSTESS PHSMVNLGDS TSRMMNTDGY
AATGVEIKIV DEDRNTLPAG HEGEEASRGP NVFMGYLDEP ELTARALDNE GWYYSGDLCR
MDEDGYIKIT GRKKDIIIRG GENISSREVE DILLQHPRIH DACVVAMPDE RLGERSCAYV
VLKPPHLSLT LEEVIAFFSR KRVAKYKYPE RIVIVEKLPR TASGKVQKFL LRQDIIERLR
QEHTAV
|
|---|
| |