| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1986 |
|---|
| Symbol | |
|---|
| ID | 6872978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1918481 |
|---|
| End bp | 1920076 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642785102 |
|---|
| Product | propionate CoA-transferase |
|---|
| Protein accession | YP_002215768 |
|---|
| Protein GI | 198244182 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.000465126 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA ATAAGCCATC ACGCATTAAT GGCCGCGTTC CCGTGCTCTC TGCACAAGAA
GCAGTAAATT ATATTCCAGA TGAGGCCACT TTATGTATTC TGGGCGCAGG CGGCGGTATT
CTCGAAGCGA CAACATTAAT TACCGCACTG GCAGATAAAT ATCAAACAAC CCAGTCACCA
CGAGATTTAT CTATTATTAG CCCTACCGGA TTAGGTGACC GCGCCGATCG CGGCATCAGC
CCGCTGGCGC AGGAGGGACT GGTAAAATGG GCGCTATGCG GACATTGGGG GCAATCTCCC
CGTATTTCTG AACTGGCTGA ACAAAATAAA ATCGCCGCCT ATAACTACCC ACAAGGCGTA
TTAACCCAGA CGCTGCGCGC CAGCGCCGCA CACCAGCCGG GTATTCTGAG CGATATCGGT
ATTGGTACCT TTGTCGACCC TCGCCAACAG GGCGGAAAAT TAAACGACGT GACTAAAGAA
GATCTCATTA AGCTGGTAGA GATCGATAAT AAAGAATATC TCTATTATAA AGCGATAGCG
CCTAATGTGG CTTTTATCCG CGCCACCACC TGCGACAGCG AAGGCTATGC ATCATTTGAA
GATGAGGTGA TGTATCTTGA TGCGCTGGTG ATCGCCCAGG CCGTTCACAA TAATGGCGGT
ATTGTAATGA TGCAGGTGCA GAAAATGGTA AAAAAAGCCA CGCTGCATCC AAAATCCGTG
CGTATTCCCG GCTATCTGGT GGATATTGTG GTTGTCGACG CCGACCAGAC GCAACTCTAT
GGCGGCGCGC CGGTGAACCG ATTTATCTCC GGGGATTTCA CTCTTGATGA TAGTACGCAG
CTTACCCTAC CCCTTAATCA GCGCAAGCTG GTAGCCCGAC GCGCGCTGTT TGAAATGCGT
AAAGGCGCGG TAGGCAATGT GGGCGTAGGC ATTGCCGACG GTATTGGTCT GGTCGCTCGC
GAGGAAGGCT GCGCCGATGA CTTCGTGCTG ACCGTAGAAA CCGGCCCGGT GGGCGGTATT
ACCTCTCAGG GCGTGGCCTT CGGCGCCAAT GTCAATACCC GCGCAATCCT TGATATGACC
TCACAATTTG ATTTTTATCA CGGCGGTGGG CTCGATGTCT GCTATTTAAG TTTTGCCGAA
GTGGATCAAC ACGGTAATGT CGGTGTACAT AAATTCAACG GCAAAATTAT GGGCACCGGC
GGGTTTATCG ATATTAGCGC AACGTCGCAA AAAATTATTT TCTGCGGAAC TCTGACGGCC
GGAAGTTTAA AAACTGAAAT TACCGATGGC AAATTAAATA TTCTGCAGGA AGGTCGCGTG
AAAAAATTCG TCAGCGAACT GCCGGAAATT ACGTTCAGTG GAAAAATTGC GCTTGAGCGC
GGGTTAGACG TGCGTTACAT CACTGAACGT GCGGTTTTCA CTCTCAAACA AGATGGCCTG
CATTTAATTG AAATTGCGCC TGGCGTCGAT CTGCAACGGG ATATTCTTGA CAAGATGGAT
TTTTCACCGG TTATCTCACC AGATTTAAAA CTGATGGACA CAAGATTATT TACCGATAGC
ACTATGGGAT TCACGCTTCC TGACGCAACA CATTAA
|
|---|
| Protein sequence | MKINKPSRIN GRVPVLSAQE AVNYIPDEAT LCILGAGGGI LEATTLITAL ADKYQTTQSP
RDLSIISPTG LGDRADRGIS PLAQEGLVKW ALCGHWGQSP RISELAEQNK IAAYNYPQGV
LTQTLRASAA HQPGILSDIG IGTFVDPRQQ GGKLNDVTKE DLIKLVEIDN KEYLYYKAIA
PNVAFIRATT CDSEGYASFE DEVMYLDALV IAQAVHNNGG IVMMQVQKMV KKATLHPKSV
RIPGYLVDIV VVDADQTQLY GGAPVNRFIS GDFTLDDSTQ LTLPLNQRKL VARRALFEMR
KGAVGNVGVG IADGIGLVAR EEGCADDFVL TVETGPVGGI TSQGVAFGAN VNTRAILDMT
SQFDFYHGGG LDVCYLSFAE VDQHGNVGVH KFNGKIMGTG GFIDISATSQ KIIFCGTLTA
GSLKTEITDG KLNILQEGRV KKFVSELPEI TFSGKIALER GLDVRYITER AVFTLKQDGL
HLIEIAPGVD LQRDILDKMD FSPVISPDLK LMDTRLFTDS TMGFTLPDAT H
|
|---|
| |